PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

HD-ZIP

Protein Properties

Length: 242aa MW: 27725.6 Da PI: 4.6456

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.2G194400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.5	6.4e-20	38	92	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +f++eq++ Le+lFe+++ + +++ +LAk+lgL+ rqV +WFqN+Ra++k Prupe.2G194400.1.p 38 KNKKRFSDEQIRSLESLFESESRLEPRKKMQLAKELGLQPRQVAIWFQNKRARWK 92 67789*************************************************9 PP
2	HD-ZIP_I/II	121.5	4.3e-39	39	130	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +k+r+s+eq+++LE+ Fe+e++Lep++K++la+eLglqprqva+WFqn+RAR+k+kqlE+dy+ L+++y++l+++ e+L+ke+++L +++ Prupe.2G194400.1.p 39 NKKRFSDEQIRSLESLFESESRLEPRKKMQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYSILRANYNNLASKFEALKKEKQALVIQVQ 129 79************************************************************************************99987 PP HD-ZIP_I/II 93 e 93 + Prupe.2G194400.1.p 130 K 130 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.9E-20	21	96	IPR009057	Homeodomain-like
PROSITE profile	PS50071	18.35	34	94	IPR001356	Homeobox domain
SMART	SM00389	6.2E-17	36	98	IPR001356	Homeobox domain
Pfam	PF00046	2.4E-17	38	92	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	5.5E-20	39	101	IPR009057	Homeodomain-like
CDD	cd00086	3.73E-15	43	95	No hit	No description
PRINTS	PR00031	6.3E-6	65	74	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	69	92	IPR017970	Homeobox, conserved site
PRINTS	PR00031	6.3E-6	74	90	IPR000047	Helix-turn-helix motif
Pfam	PF02183	2.9E-17	94	135	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MMLDQIEYSS PTAEDDHEGF SCMSSLEAAG SVKRKNSKNK KRFSDEQIRS LESLFESESR 60 LEPRKKMQLA KELGLQPRQV AIWFQNKRAR WKSKQLERDY SILRANYNNL ASKFEALKKE 120 KQALVIQVQK LNDLMRERPE EERQSCGESD NGDAARSESD QVKLNHLSLE KSEQGGRGVL 180 SDDDSSIKAE YFGLEDEPNL VSLVESADGS LTSTEDWGRL NSEGFFDESI SSDYQWWDFW 240 S*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppe.1044	0.0	fruit\| shoot

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Widely expressed. {ECO:0000269\|PubMed:16055682, ECO:0000269\|PubMed:8771791}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269\|PubMed:15604708, ECO:0000269\|PubMed:8771791}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00320	DAP	Transfer from AT2G46680	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.2G194400.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682, ECO:0000269\|PubMed:8771791}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007218213.1	1e-175	homeobox-leucine zipper protein ATHB-12
Swissprot	P46897	1e-65	ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBL	M5X028	1e-174	M5X028_PRUPE; Uncharacterized protein
STRING	EMJ19412	1e-175	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5635	34	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.1	2e-53	homeobox 7

Link Out ? help Back to Top
Phytozome	Prupe.2G194400.1.p
Entrez Gene	18786006

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhou SF, et al. Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis. New Phytol., 2015. 208(1): p. 188-97 [PMID:25919792]