PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G192300.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family Dof
Protein Properties Length: 279aa    MW: 30370.4 Da    PI: 8.078
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G192300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.91.3e-393898262
              zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                        ++++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknkks+
  Prupe.2G192300.1.p 38 PQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGTLRNVPVGGGSRKNKKST 98
                        6899******************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-243390IPR003851Zinc finger, Dof-type
PfamPF027011.1E-334096IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.0964296IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104480IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009639Biological Processresponse to red or far red light
GO:0009845Biological Processseed germination
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MDTAQWPQES GELDKAMEDH EMGSNACPRS ALEKRARPQE QLNCPRCNST NTKFCYYNNY  60
SLTQPRYFCK TCRRYWTEGG TLRNVPVGGG SRKNKKSTSS SASSSASLLS KNSIPDLNPP  120
SSLSHFSAHQ NPRSTHEGQD LNLAFNAMEQ YQQNPAAGAS TSSSAPLSAM ELLRTGIASR  180
GVNSFIPTQN MADHSNTLYA SSPGFSLQEF KPNLGFCVDG LGNRYGDHEI NGGRLLFPFG  240
DLKQISSSTA HHELDHHQNK GQGNPTGYWN GLLGGGSW*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Turned off in siliques when they reached full maturation. Not expressed in developing or mature embryos.
UniprotTISSUE SPECIFICITY: Expressed in the phloem of the mother plant, including in roots, stem, leaves and flowers, but not present in the seed and embryo. In maturing siliques, found all through the funiculus connecting the placenta to the ovule, but not in the ovule.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.2G192300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1368737e-53BT136873.1 Lotus japonicus clone JCVI-FLLj-14C11 unknown mRNA.
GenBankBT1443337e-53BT144333.1 Lotus japonicus clone JCVI-FLLj-13E12 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020414031.10.0dof zinc finger protein DOF2.5 isoform X1
SwissprotQ433855e-62DOF37_ARATH; Dof zinc finger protein DOF3.7
TrEMBLA0A251QIA50.0A0A251QIA5_PRUPE; Uncharacterized protein
STRINGXP_008233111.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67434137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61850.32e-55Dof family protein