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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Prupe.2G190400.1.p |
Common Name | PRUPE_ppa002230mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family |
ARF |
Protein Properties |
Length: 699aa MW: 77558.6 Da PI: 6.9195 |
Description |
ARF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Prupe.2G190400.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 73.9 | 1.9e-23 | 127 | 227 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86
f+k+lt sd++++g +++ +k+a+e+ +++ + +++l +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF +
Prupe.2G190400.1.p 127 FCKILTASDTSTHGGFSVLRKHATEClppldMIQATPTQELNAKDLHGYEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL--R 215
99****************************9556666679************************************************..3 PP
SSEE..EEEEE- CS
B3 87 rsefelvvkvfr 98
+++el+v+v+r
Prupe.2G190400.1.p 216 GDNGELRVGVRR 227
489999****98 PP
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2 | Auxin_resp | 101.9 | 8e-34 | 253 | 332 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83
a+ha+ t++ F v+Y+Pr+ s+F++ ++k+++a+++k+svGmRfkm+fe+e+s+err++Gt+vgv dl++ +W++SkWrsLk
Prupe.2G190400.1.p 253 ASHALMTRTLFVVYYKPRT--SQFIIGLNKYLEAINNKFSVGMRFKMRFEGEESPERRFTGTIVGVGDLSS-QWSESKWRSLK 332
6899**************6..9**********************************************777.*********96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 699 aa
Download sequence Send
to blast |
MAHLECDSSI SRAETGFGGG DLYTELWKLC AGPLVDVPRP GERVFYFPQG HMEQLEASTN 60 QELNQQIPLF NLPSKILCRV VHIHLLAEQE TDEVYAQITL HPEADQSEPT SPDPCIPEPS 120 KPTVHSFCKI LTASDTSTHG GFSVLRKHAT ECLPPLDMIQ ATPTQELNAK DLHGYEWKFK 180 HIFRGQPRRH LLTTGWSTFV TSKRLVAGDA FVFLRGDNGE LRVGVRRLAR QQSHMPSSVI 240 SSQSMHLGVL ATASHALMTR TLFVVYYKPR TSQFIIGLNK YLEAINNKFS VGMRFKMRFE 300 GEESPERRFT GTIVGVGDLS SQWSESKWRS LKIQWDEHAA VQRPERVSFW EIEPFVASAP 360 IHLVQPVVKS KRPRPVEISS SEITTNSPAS AFWYHGSTQT VELNQLGGVP EVQSSGSQVV 420 WPLRQKESNS SSYSSSRVYS EGIWPSSPHV NVSLSLFPDS KEGNKNVTTG SVLSSVASPV 480 SSKASSKPSN TPIPGQVGKE KKSDSSDLWL FGYNLTNNSK TASPPESEPV CKAMSCGGKG 540 PTTAAAFEVY QDLDVSKLSK EQKQVISEAS PGETQGKQGL TLSTRTRTKV QMQGVAVGRA 600 VDLTSLKGYD NLIDELEKMF EIKGELRPQN KWAVVFTDDE NDMMLMGDDQ WLDFCKLVKK 660 IFIYSSDEVQ KMNRCKLQNS SLDCEGTVSV DSEHRCET*
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Functional Description ? help
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Source |
Description |
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |