PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G170100.2.p
Common NamePRUPE_ppa002645mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 500aa    MW: 55839 Da    PI: 4.6302
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G170100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.80.00013153481755
                         HHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  17 NsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         N+++  Lr+++P+ +       ++Ka++L  +++Y+k+L+
  Prupe.2G170100.2.p 315 NEKLLVLRSMVPSiS------EVDKASVLDDTIKYLKELE 348
                         89999********66......8***************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.2E-10846IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088810.188298347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0034307353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.18E-7313360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.41E-5313352No hitNo description
Gene3DG3DSA:4.10.280.108.4E-8315362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048629Biological Processtrichome patterning
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MDDIDGCSQS ASIQTVVCFP YLGGVVELGV TELVPEDLSL IQHIKASLLD FSKPDCSEKS  60
SSAPHKADDD SDQVLAKVDH EIVDTLALEN LYSPSEEIKF DPMGINDLHG NYEEFNMDSP  120
EECSNGCEHN HQTEDSFMPE GINDGASQVQ SWHFMDEDFS IGVQDSMNSS DCISEAFVNK  180
KRAQSSPRHE SVNRNHLKEL ENLNDTKFSS LDLGPADDHI HYTRTLSNIL GSSTRLTENP  240
CSCDGDCKSS FVTWKKGVVD NCRPTVHQKI LKKILFTVPL MCGASSQNTI QDGLSKLQSD  300
DIHKGHVMPD KLKENEKLLV LRSMVPSISE VDKASVLDDT IKYLKELEAR AEEMESCMDT  360
VEAIARRKYL DRAEKTSDNY DKIKMDNVKK PWLNKRKACD IDETDPDLNR LVPRESLPLD  420
VKVILKEQEV LIEMRCPYRE YILLDIMDAI NNLYLDAHSV QSSTLDGVLT LSLTSKFRGA  480
AVAPVGMIKQ ALWKIAGKC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.2G170100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894050.0KP689405.1 Prunus pseudocerasus isolate Unigene457 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007220209.10.0transcription factor EGL1
TrEMBLA0A251QH400.0A0A251QH40_PRUPE; Uncharacterized protein
STRINGEMJ214080.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.13e-75bHLH family protein