PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G158300.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 518aa    MW: 57995.3 Da    PI: 9.2836
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G158300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.94.9e-182975148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g W++eEd+l++++v++ G++ W+ Ia+ ++ gR +kqc++rw+++l
  Prupe.2G158300.1.p 29 KGFWSKEEDDLIIELVAKQGNKKWSEIAKSLP-GRIGKQCRERWHNHL 75
                        688*****************************.*************97 PP
2Myb_DNA-binding50.45e-1681123145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         r +WT+ E++ l++a+k +G++ W+ Ia+ ++ gR+++++k++w+
  Prupe.2G158300.1.p  81 RTAWTKAEELTLIEAHKVYGNK-WAEIAKFLN-GRSENSIKNHWN 123
                         679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.298423IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.1E-10437IPR009057Homeodomain-like
PROSITE profilePS5129430.1772479IPR017930Myb domain
SuperFamilySSF466895.99E-3026122IPR009057Homeodomain-like
SMARTSM007171.7E-162877IPR001005SANT/Myb domain
PfamPF139211.4E-183290No hitNo description
CDDcd001676.02E-153275No hitNo description
Gene3DG3DSA:1.10.10.608.1E-263882IPR009057Homeodomain-like
SMARTSM007171.2E-1580128IPR001005SANT/Myb domain
PROSITE profilePS5129420.75780130IPR017930Myb domain
CDDcd001678.50E-1283123No hitNo description
Gene3DG3DSA:1.10.10.608.9E-2283130IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
FFAAECVPDR TDVQCLHRWQ KVLNPDLVKG FWSKEEDDLI IELVAKQGNK KWSEIAKSLP  60
GRIGKQCRER WHNHLNPDIK RTAWTKAEEL TLIEAHKVYG NKWAEIAKFL NGRSENSIKN  120
HWNSSVKKKL ELRSSHTSDM GTQNIKAECR KREVVKQGLD QKANMERNVE TCSLDLNLVL  180
GTANRRESQM QSSDKRNCWW AAANKMMKTP PRTVFYDRAA AACGLNIEQC QETSSNCGRL  240
RDSHNVTANN RYNNICNTAP DYLGFPFSHT RNHKPSDPIY LLPSRPLPRP PQASLNAGLG  300
VPGCKRTAGY FINKPVLPVT AQGLYESSSG PQAYEKKMDG GAPVNSKNSS HGGLCYRPFQ  360
LEDVEFYLEN GEFPSTDSYI QTECSSVSFC TPTSHDTRIF VDCNSPDSTL RSAARTFEKS  420
PSIIRKRRHS VSRKSVNAAN HGDSVCSKEI SNNFRNSPHL LGLSPCGKTN SSSMVHSPPR  480
SQKFGDSAVM KSVEKRLEHA FDVEWDSASA VSRTLSP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C7e-55413033159MYB PROTO-ONCOGENE PROTEIN
1h89_C7e-55413033159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.2G158300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8934030.0KT893403.1 Prunus persica cultivar Jinliuzaohong Myb family transcription factor 3R-1 (MYB3R-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020412985.10.0uncharacterized protein LOC18786687
TrEMBLA0A251QGF70.0A0A251QGF7_PRUPE; Uncharacterized protein (Fragment)
STRINGXP_008232807.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF149761314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.14e-65Homeodomain-like protein