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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.2G135000.1.p | ||||||||
Common Name | PRUPE_ppa024285mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | SBP | ||||||||
Protein Properties | Length: 420aa MW: 46264.8 Da PI: 8.307 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 128 | 3.5e-40 | 171 | 248 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC++ l +akeyhrrhkvCe+hska++v+v g+eqrfCqqCsrfh +sefDe+krsCrrrLa+hnerrrk+++ Prupe.2G135000.1.p 171 RCQVEGCHVPLMNAKEYHRRHKVCEMHSKASKVTVLGQEQRFCQQCSRFHVVSEFDESKRSCRRRLAGHNERRRKSSH 248 6**************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.3E-33 | 168 | 233 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.18 | 169 | 246 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 4.05E-38 | 170 | 251 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.8E-31 | 172 | 245 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence Send to blast |
MEIGGNMNML GHDHNNNSHI SSSSRGQNGN NNTYLTNWDI WGGATSTNNN SFYSPAAVTV 60 AATTGASSSA TCSEASAGGH AFIMGHPLQQ QQSSFYGGGA RSHYHPDPHL MCLKLGKRHY 120 FEDHARAHAH ALDDRHVAGL PVGVMSKRGR GGAAQQLYGS GATLALKVVP RCQVEGCHVP 180 LMNAKEYHRR HKVCEMHSKA SKVTVLGQEQ RFCQQCSRFH VVSEFDESKR SCRRRLAGHN 240 ERRRKSSHDS LSRTSSQEKG RFGYLSTPTG RALSLLSSRN TGFDSWVSPS DLSSRSSAAL 300 RELIAENRAA VLARQLINSS EDRNWDSSSH NSHATEDLFC DHGQSWSNSV EPQQHQMFSD 360 HNYQHGWDRF HEGSGAHLTL DLRQAPSPAY GFLPERGKTK AEEDQECDLW NSFHGASVV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-29 | 159 | 245 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.2G135000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020412066.1 | 0.0 | squamosa promoter-binding-like protein 7 | ||||
TrEMBL | A0A251QGK4 | 0.0 | A0A251QGK4_PRUPE; Uncharacterized protein | ||||
STRING | EMJ22156 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9613 | 27 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27370.4 | 6e-36 | squamosa promoter binding protein-like 10 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.2G135000.1.p |
Entrez Gene | 18784931 |