PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

HD-ZIP

Protein Properties

Length: 301aa MW: 33391.4 Da PI: 7.6639

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.2G127300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.2	2.9e-18	129	183	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Le+ F+++++++ ++++ LAk+l+L rqV vWFqNrRa+ k Prupe.2G127300.1.p 129 RKKLRLTKEQSLLLEDTFKEHNTLNPRQKQALAKQLNLRPRQVEVWFQNRRARTK 183 78889************************************************98 PP
2	HD-ZIP_I/II	123.8	8e-40	129	218	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+keq+ lLE++F+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e Lkr++++l+e+n+rL+kev+eLr +l Prupe.2G127300.1.p 129 RKKLRLTKEQSLLLEDTFKEHNTLNPRQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCCEKLTEDNRRLQKEVQELR-AL 218 69*************************************************************************************9.55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	5	1	18	No hit	No description
Pfam	PF04618	3.4E-30	1	100	IPR006712	HD-ZIP protein, N-terminal
Gene3D	G3DSA:1.10.10.60	4.0E-19	107	183	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.37E-19	113	186	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.2	125	185	IPR001356	Homeobox domain
SMART	SM00389	6.8E-15	127	189	IPR001356	Homeobox domain
Pfam	PF00046	1.4E-15	129	183	IPR001356	Homeobox domain
CDD	cd00086	1.08E-14	129	186	No hit	No description
PROSITE pattern	PS00027	0	160	183	IPR017970	Homeobox, conserved site
Pfam	PF02183	1.4E-10	185	219	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	3.7E-25	185	228	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MGEKDDGLGL GLSLSLGCKP NENESSLRLN LMEKPSQPMQ NHQHRTSWNE IFQFPDRNPD 60 ARSCLRGIDV NQAADFEEEN GVSSPNSTVS SLSGKRSERE PIGDENEAER TSCSHGSDDE 120 DGNGGDLSRK KLRLTKEQSL LLEDTFKEHN TLNPRQKQAL AKQLNLRPRQ VEVWFQNRRA 180 RTKLKQTEVD CELLKRCCEK LTEDNRRLQK EVQELRALKL SPQLYMQMSP PTTLTMCPSC 240 ERVAVSSLSS SAAAAASSTS PANGQTCQSG PPNVQRPIPI SPWATLPIQR RPLDASAPKS 300 *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	127	133	SRKKLRL
2	177	185	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.2G127300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007203138.1	0.0	homeobox-leucine zipper protein HAT3
Swissprot	P46602	1e-99	HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBL	M5VSJ6	0.0	M5VSJ6_PRUPE; Uncharacterized protein
STRING	EMJ04337	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1239	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60390.1	1e-91	homeobox-leucine zipper protein 3

Link Out ? help Back to Top
Phytozome	Prupe.2G127300.1.p
Entrez Gene	18770003

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zou LJ, et al. Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus. Plant Cell Physiol., 2016. 57(9): p. 1879-89 [PMID:27328697] Caggiano MP, et al. Cell type boundaries organize plant development. Elife, 2018. [PMID:28895530]