PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

M-type_MADS

Protein Properties

Length: 231aa MW: 25802.9 Da PI: 8.9623

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.2G120200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	74.7	7.4e-24	21	68	2	49
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 + en n+qvtfskRr gi+KKA ELSvLC+aev vi+fs+ gk++ y Prupe.2G120200.1.p 21 KLENLNNKQVTFSKRRSGIFKKAAELSVLCGAEVGVIVFSTAGKVFCY 68 67999***************************************9877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	4.6E-33	12	71	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	27.432	12	72	IPR002100	Transcription factor, MADS-box
CDD	cd00265	6.00E-34	13	81	No hit	No description
SuperFamily	SSF55455	1.06E-27	13	83	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-22	14	34	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	14	68	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.9E-22	22	68	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-22	34	49	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-22	49	70	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MVILRKLPKR TQGRKRIEIK KLENLNNKQV TFSKRRSGIF KKAAELSVLC GAEVGVIVFS 60 TAGKVFCYGH PNVETVLDCY RSGVAPPAVF DDTAGDQNPN RVPMAEFNKE YMEAIKELEE 120 QKRRVVEVKE EVRMKKVVGG CGERFWWEDE SVDLDALDVQ EVEHYLMSLE DVRKKVAARL 180 HEVRILNGTL TPRALPPVPA VHRLCHMPMM TNGFGAQGGQ FGGGYPGFGV *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	1e-15	13	86	2	75	Myocyte-specific enhancer factor 2B
1tqe_Q	1e-15	13	86	2	75	Myocyte-specific enhancer factor 2B
1tqe_R	1e-15	13	86	2	75	Myocyte-specific enhancer factor 2B
1tqe_S	1e-15	13	86	2	75	Myocyte-specific enhancer factor 2B
6byy_A	1e-15	13	86	2	75	MEF2 CHIMERA
6byy_B	1e-15	13	86	2	75	MEF2 CHIMERA
6byy_C	1e-15	13	86	2	75	MEF2 CHIMERA
6byy_D	1e-15	13	86	2	75	MEF2 CHIMERA
6c9l_A	1e-15	13	86	2	75	Myocyte-specific enhancer factor 2B
6c9l_B	1e-15	13	86	2	75	Myocyte-specific enhancer factor 2B
6c9l_C	1e-15	13	86	2	75	Myocyte-specific enhancer factor 2B
6c9l_D	1e-15	13	86	2	75	Myocyte-specific enhancer factor 2B
6c9l_E	1e-15	13	86	2	75	Myocyte-specific enhancer factor 2B
6c9l_F	1e-15	13	86	2	75	Myocyte-specific enhancer factor 2B
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.2G120200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007219778.1	1e-171	agamous-like MADS-box protein AGL62
TrEMBL	M5X4K9	1e-170	M5X4K9_PRUPE; Uncharacterized protein
STRING	EMJ20977	1e-170	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF128	33	331

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	1e-27	AGAMOUS-like 62

Link Out ? help Back to Top
Phytozome	Prupe.2G120200.1.p
Entrez Gene	18785229