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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.2G110900.1.p | ||||||||
Common Name | PRUPE_ppa021970mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 367aa MW: 42312.7 Da PI: 7.1078 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 60 | 2.9e-19 | 11 | 51 | 3 | 43 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i n++ r++tf kR +g++KKA+E S+LC+++v++ii++++ Prupe.2G110900.1.p 11 IANERSRKTTFQKRSKGMMKKAYEFSTLCEVDVCIIIYGPK 51 89*************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.2E-19 | 1 | 58 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 19.119 | 1 | 51 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 2.20E-23 | 2 | 87 | No hit | No description |
SuperFamily | SSF55455 | 2.75E-21 | 2 | 98 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.0E-9 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.8E-18 | 11 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.0E-9 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MGRGRLKMEL IANERSRKTT FQKRSKGMMK KAYEFSTLCE VDVCIIIYGP KLTDRPPELQ 60 TWPQNSEQVD RIINKYKAST MSKPAKKTFD LSDLLMDRKN KVYADIYRAR KEMYEAKYPT 120 WDERIESFSE NQLEALLDKL DAKLESGKRT LLNKRNGAAH RLLVTKKEWM GGNPNMGESS 180 SQKEPCNSYM QDHYHEEDQN PTSSLNNNTV DMLQPFAVSS FDHHQPSDQT LPFDNSDQHL 240 NNLMAPNPSS MAMWMLMEGN YNYSNLQYRA GDSSSAHSQS PLEGYHCNYS DQMNMNMMMT 300 NNNIGPLSSS SMSHYYARLM QPAVPYMHQM MQPSISSQQL QVHTSQVKED QYEDINQYLV 360 MNNKMG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.2G110900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007219420.1 | 0.0 | MADS-box transcription factor 50 | ||||
TrEMBL | M5X3X5 | 0.0 | M5X3X5_PRUPE; Uncharacterized protein | ||||
STRING | EMJ20619 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF534 | 31 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55690.1 | 6e-24 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.2G110900.1.p |
Entrez Gene | 18785735 |