PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G097400.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 187aa    MW: 20959.6 Da    PI: 8.4377
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G097400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.96.6e-071441431
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC. CS
                 HLH  4 ahnerErrRRdriNsafeeLrellPkas 31
                        +  + E++RR ++N +++ Lr l+P+++
  Prupe.2G097400.1.p 14 KDFATEKQRRVQLNGKYSALRYLVPNPT 41
                        56789*********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.65E-51240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-41539IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MGSIGRGREV ERIKDFATEK QRRVQLNGKY SALRYLVPNP TKLVEKKRCG RERHQTEQDG  60
GAGDGESCKP LGDPQDQSYN NGSLRSSWLR RKYKDTEVDI RIIDDEVSIN LVQTKKVNSL  120
LYVSKLLDEL QLDLHHAEGG HIGNSYSCLF NTKMHEGSFL YAKAIGDKLI EVLDGQYAAV  180
PPTSSY*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.2G097400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894081e-124KP689408.1 Prunus pseudocerasus isolate CL2155.2 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020413510.12e-97transcription factor bHLH10
RefseqXP_020413511.12e-97transcription factor bHLH10
SwissprotQ8GX461e-50BH091_ARATH; Transcription factor bHLH91
TrEMBLA0A251QDL31e-135A0A251QDL3_PRUPE; Uncharacterized protein
STRINGEMJ211481e-108(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37433262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.15e-53bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Cui J, et al.
    Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.
    Plant Cell, 2016. 28(5): p. 1078-93
    [PMID:27113773]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]