PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 127aa MW: 14356.6 Da PI: 8.4697

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.2G014200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	105.3	5.1e-33	4	100	1	96
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrr+C++dC+l+pyfp+++p++f v++++Gasnv k+l++l ++ r +a+++l yeA++r++d +yG++gvi++l + + Prupe.2G014200.1.p 4 RCAACKYLRRRCPSDCILSPYFPSSDPQRFTSVNRIYGASNVAKMLQELiMPHLRAEAAETLRYEAQCRIQDLIYGCIGVISQLYINKYKI 94 6*********************************************978888***************************98776666 PP DUF260 91 kaelal 96 +e l Prupe.2G014200.1.p 95 YTECRL 100 666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.724	3	105	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.9E-33	4	93	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 127 aa Download sequence Send to blast
MSGRCAACKY LRRRCPSDCI LSPYFPSSDP QRFTSVNRIY GASNVAKMLQ ELIMPHLRAE 60 AAETLRYEAQ CRIQDLIYGC IGVISQLYIN KYKIYTECRL AKTRAEIALM NSDGQEPPQA 120 QVDQQI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-30	5	103	12	109	LOB family transfactor Ramosa2.1
5ly0_B	2e-30	5	103	12	109	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.2G014200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007219658.2	2e-89	LOB domain-containing protein 24
Swissprot	P59467	1e-39	LBD23_ARATH; LOB domain-containing protein 23
Swissprot	P59468	1e-39	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	A0A251Q9A6	5e-88	A0A251Q9A6_PRUPE; Uncharacterized protein
STRING	EMJ20857	5e-85	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3697	30	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	5e-42	LOB domain-containing protein 24

Link Out ? help Back to Top
Phytozome	Prupe.2G014200.1.p
Entrez Gene	18786836