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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.1G587100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | NAC | ||||||||
Protein Properties | Length: 470aa MW: 53062.4 Da PI: 6.8799 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 159.8 | 1.1e-49 | 45 | 170 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp++++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + Prupe.1G587100.1.p 45 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPAMAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMI 134 79***************************.89***************888889************************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 s++ + +glkktLvfy+g+apkg +t+W+m+eyrl Prupe.1G587100.1.p 135 RSENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 170 **********************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 55.588 | 44 | 191 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.09E-55 | 44 | 190 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-24 | 46 | 170 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 470 aa Download sequence Send to blast |
MAIAATTSSS STMSVNDESN KADHDHDHHH DGGDDDDEHE HDMVMPGFRF HPTEEELVEF 60 YLRRKVEGKR FNVELITFLD LYRYDPWELP AMAAIGEKEW FFYVPRDRKY RNGDRPNRVT 120 TSGYWKATGA DRMIRSENFR SIGLKKTLVF YSGKAPKGIR TSWIMNEYRL PHHETERYQK 180 GEISLCRVYK RAGVEDHPSL PRSLPASKAS TSRSSVLVAP STTISSDNKK QHNTSTNINN 240 NNINTVHSIM EKLQAFNEGQ SQQFHQDHEH QVDQKMSVEP EGSSGNSDVT TVLGLSKRNA 300 YHHNNIGQAH HHPLDQEEGM AAFLHQSNSK QAAANCFSLI PSSTNSSATL FTAGSSSVSS 360 SNMNAIDDLH RLLTYQHVQQ QAAAASSHHQ QQHVHHHVVQ YYDDAHHHPQ PNNLFSTFPA 420 VAPHVQSAIP PQQLAPNALP TAFSDRLWDW NPISDPNRPD YNNPFKVLV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-55 | 30 | 191 | 3 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-55 | 30 | 191 | 3 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-55 | 30 | 191 | 3 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-55 | 30 | 191 | 3 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 5e-55 | 30 | 191 | 3 | 165 | NAC domain-containing protein 19 |
4dul_B | 5e-55 | 30 | 191 | 3 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00257 | DAP | Transfer from AT2G02450 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.1G587100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007225578.2 | 0.0 | NAC domain-containing protein 35 isoform X1 | ||||
TrEMBL | A0A251RKG6 | 0.0 | A0A251RKG6_PRUPE; Uncharacterized protein | ||||
STRING | XP_008218619.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7203 | 31 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.1 | 1e-113 | NAC domain containing protein 35 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.1G587100.1.p |