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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.1G586000.1.p | ||||||||
Common Name | PRUPE_ppa015411mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 342aa MW: 37463 Da PI: 7.6879 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 102.4 | 2.9e-32 | 106 | 162 | 3 | 60 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 +vrYkeClkNhAa++Gg+a+DGCgEfmps geegt++al+C+AC+CHRnFHR+eve e Prupe.1G586000.1.p 106 GVRYKECLKNHAAAMGGTATDGCGEFMPS-GEEGTIEALNCSACNCHRNFHRKEVEGE 162 69**************************9.999*********************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 5.0E-25 | 107 | 162 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 8.9E-29 | 107 | 159 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.5E-31 | 108 | 159 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.067 | 109 | 158 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 6.58E-19 | 259 | 330 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.3E-30 | 262 | 331 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 4.1E-27 | 269 | 325 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MELSSQEAGE IPIPINSSYG GGHGHGHMIH HNHHHHDPAA AATVVPHNHS NLIPSSAVPQ 60 NQNPSNTNGS SMPTSLDHHH HHPHSHPHHE EEEHVNIVPY SCKKVGVRYK ECLKNHAAAM 120 GGTATDGCGE FMPSGEEGTI EALNCSACNC HRNFHRKEVE GEQQPFPSSW DHNFHHTINR 180 VGVGSRKFLL GPGHHKNLIA APQEGLGYHT MPSSRAAAPH QMIMSYNMGM GMGMGMGMGM 240 GALPSESDEQ EEHDGGGAVG RPAAAQLAKK RFRTKFTQEQ KEKMFNFAEK VGWKIQKQED 300 SVVQNFCQEI GVKRRVLKVW MHNNKHNLAK KNPPPPPPPP A* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 5e-23 | 270 | 327 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00258 | DAP | Transfer from AT2G02540 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.1G586000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ492960 | 1e-54 | FJ492960.1 Rhamnus alaternus microsatellite RaA117 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020419157.1 | 0.0 | zinc-finger homeodomain protein 4 | ||||
TrEMBL | M5XPC6 | 0.0 | M5XPC6_PRUPE; Uncharacterized protein | ||||
STRING | EMJ27371 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 3e-73 | homeobox protein 31 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.1G586000.1.p |
Entrez Gene | 18789014 |