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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.1G560100.2.p | ||||||||
Common Name | PRUPE_ppa019508mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | NAC | ||||||||
Protein Properties | Length: 148aa MW: 16469.2 Da PI: 5.0042 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 57.8 | 3.7e-18 | 7 | 68 | 72 | 128 |
NAM 72 krknratksgyWkatgkdkevlsk....kgelvglkktLvfykgrapk.gektdWvmheyrl 128 + +nr+t++gyWka g +++v+++ ++++vg+k+ L+fy g+ap+ g kt+W+mheyrl Prupe.1G560100.2.p 7 RTQNRVTSNGYWKALGVEEPVITRsscnSTHKVGMKRYLAFYVGEAPNsGIKTNWIMHEYRL 68 57899*****************9988877888**********997765289*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 25.376 | 1 | 114 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.57E-19 | 7 | 113 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-9 | 8 | 68 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0043067 | Biological Process | regulation of programmed cell death | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MGTRCRRTQN RVTSNGYWKA LGVEEPVITR SSCNSTHKVG MKRYLAFYVG EAPNSGIKTN 60 WIMHEYRLSP LSAGDGASSS SSSSTTTRSS KRRGHLKTVN NEFSEYVLCR VYERDEDDDD 120 DDDGTVLSCL DEVFLSLDDL DEISLPI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-14 | 10 | 115 | 90 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-14 | 10 | 115 | 90 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-14 | 10 | 115 | 90 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-14 | 10 | 115 | 90 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-14 | 10 | 115 | 93 | 169 | NAC domain-containing protein 19 |
3swm_B | 1e-14 | 10 | 115 | 93 | 169 | NAC domain-containing protein 19 |
3swm_C | 1e-14 | 10 | 115 | 93 | 169 | NAC domain-containing protein 19 |
3swm_D | 1e-14 | 10 | 115 | 93 | 169 | NAC domain-containing protein 19 |
3swp_A | 1e-14 | 10 | 115 | 93 | 169 | NAC domain-containing protein 19 |
3swp_B | 1e-14 | 10 | 115 | 93 | 169 | NAC domain-containing protein 19 |
3swp_C | 1e-14 | 10 | 115 | 93 | 169 | NAC domain-containing protein 19 |
3swp_D | 1e-14 | 10 | 115 | 93 | 169 | NAC domain-containing protein 19 |
4dul_A | 2e-14 | 10 | 115 | 90 | 166 | NAC domain-containing protein 19 |
4dul_B | 2e-14 | 10 | 115 | 90 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in root xylem vessels (PubMed:15923329). Expressed in stems, vascular tissue of cauline leaves and tracheary elements of sepals (PubMed:18069942). {ECO:0000269|PubMed:15923329, ECO:0000269|PubMed:18069942}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.1G560100.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020421993.1 | 1e-100 | NAC domain-containing protein 104 isoform X1 | ||||
Refseq | XP_020421998.1 | 1e-100 | NAC domain-containing protein 104 isoform X1 | ||||
Swissprot | Q8GWK6 | 9e-36 | NC104_ARATH; NAC domain-containing protein 104 | ||||
TrEMBL | A0A251RIV0 | 1e-104 | A0A251RIV0_PRUPE; Uncharacterized protein | ||||
STRING | EMJ25493 | 2e-74 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 3e-33 | xylem NAC domain 1 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.1G560100.2.p |
Entrez Gene | 18791802 |
Publications ? help Back to Top | |||
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