PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

NAC

Protein Properties

Length: 148aa MW: 16469.2 Da PI: 5.0042

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.1G560100.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	57.8	3.7e-18	7	68	72	128
NAM 72 krknratksgyWkatgkdkevlsk....kgelvglkktLvfykgrapk.gektdWvmheyrl 128 + +nr+t++gyWka g +++v+++ ++++vg+k+ L+fy g+ap+ g kt+W+mheyrl Prupe.1G560100.2.p 7 RTQNRVTSNGYWKALGVEEPVITRsscnSTHKVGMKRYLAFYVGEAPNsGIKTNWIMHEYRL 68 57899***************9988877888******997765289*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	25.376	1	114	IPR003441	NAC domain
SuperFamily	SSF101941	1.57E-19	7	113	IPR003441	NAC domain
Pfam	PF02365	1.5E-9	8	68	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010089	Biological Process	xylem development
GO:0043067	Biological Process	regulation of programmed cell death
GO:0048367	Biological Process	shoot system development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence Send to blast
MGTRCRRTQN RVTSNGYWKA LGVEEPVITR SSCNSTHKVG MKRYLAFYVG EAPNSGIKTN 60 WIMHEYRLSP LSAGDGASSS SSSSTTTRSS KRRGHLKTVN NEFSEYVLCR VYERDEDDDD 120 DDDGTVLSCL DEVFLSLDDL DEISLPI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-14	10	115	90	166	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-14	10	115	90	166	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-14	10	115	90	166	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-14	10	115	90	166	NO APICAL MERISTEM PROTEIN
3swm_A	1e-14	10	115	93	169	NAC domain-containing protein 19
3swm_B	1e-14	10	115	93	169	NAC domain-containing protein 19
3swm_C	1e-14	10	115	93	169	NAC domain-containing protein 19
3swm_D	1e-14	10	115	93	169	NAC domain-containing protein 19
3swp_A	1e-14	10	115	93	169	NAC domain-containing protein 19
3swp_B	1e-14	10	115	93	169	NAC domain-containing protein 19
3swp_C	1e-14	10	115	93	169	NAC domain-containing protein 19
3swp_D	1e-14	10	115	93	169	NAC domain-containing protein 19
4dul_A	2e-14	10	115	90	166	NAC domain-containing protein 19
4dul_B	2e-14	10	115	90	166	NAC domain-containing protein 19
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in root xylem vessels (PubMed:15923329). Expressed in stems, vascular tissue of cauline leaves and tracheary elements of sepals (PubMed:18069942). {ECO:0000269\|PubMed:15923329, ECO:0000269\|PubMed:18069942}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.1G560100.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020421993.1	1e-100	NAC domain-containing protein 104 isoform X1
Refseq	XP_020421998.1	1e-100	NAC domain-containing protein 104 isoform X1
Swissprot	Q8GWK6	9e-36	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A251RIV0	1e-104	A0A251RIV0_PRUPE; Uncharacterized protein
STRING	EMJ25493	2e-74	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	3e-33	xylem NAC domain 1

Link Out ? help Back to Top
Phytozome	Prupe.1G560100.2.p
Entrez Gene	18791802

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]