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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Prupe.1G560100.1.p |
Common Name | PRUPE_ppa019508mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family |
NAC |
Protein Properties |
Length: 211aa MW: 23995.7 Da PI: 4.7616 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Prupe.1G560100.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 120.3 | 1.8e-37 | 8 | 131 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91
lppGfrF+Ptdeelvv++L++k++ +++ +vi+++++y ++Pw+L+ k+ e ++wyf+s+r +nr+t++gyWka g +++
Prupe.1G560100.1.p 8 LPPGFRFDPTDEELVVHFLQRKAALLPFHP-DVIPDLHLYPYDPWELDGKALREGNKWYFYSRRT--------QNRVTSNGYWKALGVEEP 89
79*************************999.99**************977677889******984........58**************** PP
NAM 92 vlsk....kgelvglkktLvfykgrapk.gektdWvmheyrl 128
v+++ ++++vg+k+ L+fy g+ap+ g kt+W+mheyrl
Prupe.1G560100.1.p 90 VITRsscnSTHKVGMKRYLAFYVGEAPNsGIKTNWIMHEYRL 131
**9988877888**********997765289*********98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 211 aa
Download sequence Send
to blast |
MGDDQFKLPP GFRFDPTDEE LVVHFLQRKA ALLPFHPDVI PDLHLYPYDP WELDGKALRE 60 GNKWYFYSRR TQNRVTSNGY WKALGVEEPV ITRSSCNSTH KVGMKRYLAF YVGEAPNSGI 120 KTNWIMHEYR LSPLSAGDGA SSSSSSSTTT RSSKRRGHLK TVNNEFSEYV LCRVYERDED 180 DDDDDDGTVL SCLDEVFLSL DDLDEISLPI *
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 6e-38 | 5 | 178 | 14 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-38 | 5 | 178 | 14 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-38 | 5 | 178 | 14 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-38 | 5 | 178 | 14 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-38 | 5 | 178 | 17 | 169 | NAC domain-containing protein 19 |
3swm_B | 6e-38 | 5 | 178 | 17 | 169 | NAC domain-containing protein 19 |
3swm_C | 6e-38 | 5 | 178 | 17 | 169 | NAC domain-containing protein 19 |
3swm_D | 6e-38 | 5 | 178 | 17 | 169 | NAC domain-containing protein 19 |
3swp_A | 6e-38 | 5 | 178 | 17 | 169 | NAC domain-containing protein 19 |
3swp_B | 6e-38 | 5 | 178 | 17 | 169 | NAC domain-containing protein 19 |
3swp_C | 6e-38 | 5 | 178 | 17 | 169 | NAC domain-containing protein 19 |
3swp_D | 6e-38 | 5 | 178 | 17 | 169 | NAC domain-containing protein 19 |
4dul_A | 6e-38 | 5 | 178 | 14 | 166 | NAC domain-containing protein 19 |
4dul_B | 6e-38 | 5 | 178 | 14 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in root xylem vessels (PubMed:15923329). Expressed in stems, vascular tissue of cauline leaves and tracheary elements of sepals (PubMed:18069942). {ECO:0000269|PubMed:15923329, ECO:0000269|PubMed:18069942}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |