PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G551600.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 407aa    MW: 46839.8 Da    PI: 7.9743
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G551600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.00055678123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y C++Cg + s ks+  +Hi +H
  Prupe.1G551600.1.p 56 YYCEYCGIRRSKKSLIASHILSH 78
                        89*******************96 PP
2zf-C2H220.41.4e-06101122223
                         EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                         +C+ Cg sF+ + +Lk+H+++H
  Prupe.1G551600.1.p 101 TCQECGVSFRKPAHLKQHMQSH 122
                         6*******************99 PP
3zf-C2H215.93.8e-05128152123
                         EEET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                         y C+  dC+ s++rk++L+rH+  H
  Prupe.1G551600.1.p 128 YICSvdDCHSSYRRKDHLNRHLLQH 152
                         89*******************9887 PP
4zf-C2H213.70.00018157182123
                         EEET..TTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                         +kCp  +C++ F  + n++rH +  H
  Prupe.1G551600.1.p 157 FKCPieNCNREFGFQGNMRRHVNElH 182
                         89*******************99888 PP
5zf-C2H215.45.2e-05197221123
                         EEET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                         ++C+   Cgk+F+  s L++H  +H
  Prupe.1G551600.1.p 197 HVCKeiGCGKVFRFASRLRKHEDSH 221
                         79*******************9888 PP
6zf-C2H215.35.9e-05288312223
                         EET..TTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                         kC    C  +F++ksnL++H +  H
  Prupe.1G551600.1.p 288 KCDykGCLHTFTTKSNLTKHVKAvH 312
                         688889**************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355185678IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.6E-897120IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.68E-1099152No hitNo description
SMARTSM003550.0054100122IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.651100127IPR007087Zinc finger, C2H2
PROSITE patternPS000280102122IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.2E-12121154IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0092128152IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.66128157IPR007087Zinc finger, C2H2
PROSITE patternPS000280130152IPR007087Zinc finger, C2H2
SuperFamilySSF576679.94E-6155183No hitNo description
Gene3DG3DSA:3.30.160.609.0E-5155178IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.014157182IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.718157187IPR007087Zinc finger, C2H2
PROSITE patternPS000280159182IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-6192221IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.031197221IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.201197226IPR007087Zinc finger, C2H2
PROSITE patternPS000280199221IPR007087Zinc finger, C2H2
SMARTSM003558.6229254IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280231254IPR007087Zinc finger, C2H2
SMARTSM0035526257278IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.08E-6272325No hitNo description
SMARTSM003550.003287312IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.759287317IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.7E-6288312IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280289312IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.4E-5313341IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003557.6318344IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280320344IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MKTLDSLHCP SEASGSQSPN AVACSLVGET FRVGALAMDK GQAEMEGPIF RDIRRYYCEY  60
CGIRRSKKSL IASHILSHHK DEMEMSSVDE DREVEQEKSN TCQECGVSFR KPAHLKQHMQ  120
SHSLERPYIC SVDDCHSSYR RKDHLNRHLL QHQGKLFKCP IENCNREFGF QGNMRRHVNE  180
LHSEDSPSTN GGAQKQHVCK EIGCGKVFRF ASRLRKHEDS HVKLDTVEAF CSEPGCMKHF  240
TNEQCLQAHI HSCHQHTTCE ICGTKQLRNN IKRHLLTHED KHSIERIKCD YKGCLHTFTT  300
KSNLTKHVKA VHLEHKPFVC SFSGCGLRFA YKHVRDNHEK TGCHVYTQGD FEEADEQFRS  360
RPRGGRKREC PDIPMLVRKR VTPPNQLGQE CEYISWLHSQ EDNDEQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A5e-15862818187Aart
2i13_B5e-15862818187Aart
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Both isoforms 1 and 2 transcripts are expressed in seedlings and both TFIIIA and TFIIIA-C are present at similar ratios in 10-day-old seedlings (at protein level). In correlation with the reorganization of 5S rDNA chromatin to a mature state, full-length isoform 1 protein TFIIIA with transcriptional activity accumulates and permits de novo transcription of 5S rRNA. Isoforms 1 and 2 transcripts accumulate in various tissues of the reproductive phase, including flowers and siliques, but only isoform 2 is present in mature seeds. In flowers, both TFIIIA and TFIIIA-C are present at similar ratios (at protein level). Very low amounts of TFIIIA are found in extracts from fresh siliques compared to TFIIIA-C. The amount of full-length TFIIIA protein progressively increases from fresh siliques to seeds concomitant with lower proportions of the shorter TFIIIA-C protein (at protein level) thus leading to 5S rRNA accumulation in the seed. {ECO:0000269|PubMed:22353599}.
UniprotTISSUE SPECIFICITY: Expressed in seedlings, flowers, siliques and seeds. {ECO:0000269|PubMed:22353599}.
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G551600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020410711.10.0transcription factor IIIA
SwissprotQ84MZ41e-147TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A251RIW50.0A0A251RIW5_PRUPE; Uncharacterized protein
STRINGXP_008219031.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30693370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-150transcription factor IIIA