PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

GATA

Protein Properties

Length: 297aa MW: 31953.1 Da PI: 5.8234

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.1G534300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	49.5	5.9e-16	207	243	1	35
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg ++ Tp++Rrgp+g+++LCnaCGl+++ +g+ Prupe.1G534300.1.p 207 CKHCGISSksTPMMRRGPSGPRSLCNACGLFWANRGT 243 ***99999*********************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00979	2.5E-12	72	107	IPR010399	Tify domain
PROSITE profile	PS51320	14.569	72	107	IPR010399	Tify domain
Pfam	PF06200	1.0E-12	75	106	IPR010399	Tify domain
Pfam	PF06203	1.6E-15	139	181	IPR010402	CCT domain
PROSITE profile	PS51017	12.64	139	181	IPR010402	CCT domain
SuperFamily	SSF57716	1.09E-11	200	252	No hit	No description
SMART	SM00401	1.8E-16	201	254	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	10.475	201	260	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	2.5E-15	205	248	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	6.22E-16	206	253	No hit	No description
Pfam	PF00320	1.0E-13	207	243	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	207	234	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0007623	Biological Process	circadian rhythm
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MYGHSEPMTM SNPIPAGGDD DAAGPGVDSI DNAHIHYEPH TLEDGGGVVA VVEDVSSDPV 60 YDVGSSEMRA QPYDGSSQLT LSFRGQVFVF DAVTPEKVQA VLLLLGGSEL SSGPQGAELA 120 SQNQRGTEDF PIRCSQPHRA ASLSRFRQKR KERCFDKKVR YSVRQEVALR MQRNKGQFSS 180 SKKSDGDYSW GNGQESGQDD SHAETSCKHC GISSKSTPMM RRGPSGPRSL CNACGLFWAN 240 RGTLRELSKR TQDHSVTPAE QGEADTKDLN SVTAIDAHNS LVPFSNGDSS ALVAEQ*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269\|PubMed:10945256, ECO:0000269\|PubMed:14966217}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269\|PubMed:14966217}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00451	DAP	Transfer from AT4G24470	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.1G534300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007223210.2	0.0	GATA transcription factor 25, partial
Swissprot	Q9LRH6	4e-92	GAT25_ARATH; GATA transcription factor 25
TrEMBL	M5XEQ0	0.0	M5XEQ0_PRUPE; Uncharacterized protein
STRING	EMJ24409	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2836	33	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24470.2	1e-86	GATA-type zinc finger protein with TIFY domain

Link Out ? help Back to Top
Phytozome	Prupe.1G534300.1.p
Entrez Gene	18793811

Publications ? help Back to Top
Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751]