PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

MYB_related

Protein Properties

Length: 577aa MW: 60699.9 Da PI: 6.7482

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.1G532600.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.2	7.8e-08	143	187	1	44
TSSS-HHHHHHHHHHHHHTTTT-HHHHHH..HHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIar..tmgkgRtlkqcksrw 44 r++W++ Ed l+ av++ G g+W+ I r g Rt+ q+ rw Prupe.1G532600.4.p 143 RKKWSEAEDFELIAAVQKCGEGNWANILRadFKG-DRTAGQLSQRW 187 789************************8721344.78888887777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.8E-12	136	192	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.474	138	195	IPR017930	Myb domain
SuperFamily	SSF46689	9.72E-12	139	192	IPR009057	Homeodomain-like
SMART	SM00717	8.3E-9	142	193	IPR001005	SANT/Myb domain
Pfam	PF00249	2.3E-6	143	187	IPR001005	SANT/Myb domain
CDD	cd11660	1.38E-13	144	192	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 577 aa Download sequence Send to blast
MLWRHLAYRE ALVDKFDNGS QPLDDDSDLE YELEAFPAVC GEASTEAAAC VKVLIASGLP 60 SDSSHRNGTT VEAPLTINIP NGQPSRTHEN SEPTCSMQGK NITVPVSVKK QPLPSATTSS 120 VATADGGDAN GSASNSMAPR KKRKKWSEAE DFELIAAVQK CGEGNWANIL RADFKGDRTA 180 GQLSQRWAII KKRNQELNLG GNSSGKLSEA QLAARHSLSV ALNMPNLTAK TIGTAGTNAH 240 NKFARKVATS NPVLTTGAKA EPQSQQDLKP TKKPYQMELL GSTTKSQVTS KNTLTKPNCN 300 DDDIVRAIAV AAGARIASPS DAASLLKAAQ AKNAVHIMPT SGSIQSSLPG GMSTHSEPHP 360 NLHMRTGLAG ITLSTPPPTD VTPSAVHPGS SKALPPMSQP TPTNGTLLSR QIKGVSCSLD 420 AKLPSKQEVR TEEGSVIAEL GCTPIVLAQD EAVISRNGQD EQVKDDKVDS PNQKADLKIL 480 ISNAENAVSS LNIERDETHH KAVISVQGEQ RQSAKDNEVV CSLIGGGDPS AVDSSEKPSS 540 TEKQTDLLGT VTDGCNGKHV LSKEEAGIKI NGEHEG*

Sequence ? help Back to Top

Protein Sequence Length: 577 aa Download sequence Send to blast

MLWRHLAYRE ALVDKFDNGS QPLDDDSDLE YELEAFPAVC GEASTEAAAC VKVLIASGLP  60
SDSSHRNGTT VEAPLTINIP NGQPSRTHEN SEPTCSMQGK NITVPVSVKK QPLPSATTSS  120
VATADGGDAN GSASNSMAPR KKRKKWSEAE DFELIAAVQK CGEGNWANIL RADFKGDRTA  180
GQLSQRWAII KKRNQELNLG GNSSGKLSEA QLAARHSLSV ALNMPNLTAK TIGTAGTNAH  240
NKFARKVATS NPVLTTGAKA EPQSQQDLKP TKKPYQMELL GSTTKSQVTS KNTLTKPNCN  300
DDDIVRAIAV AAGARIASPS DAASLLKAAQ AKNAVHIMPT SGSIQSSLPG GMSTHSEPHP  360
NLHMRTGLAG ITLSTPPPTD VTPSAVHPGS SKALPPMSQP TPTNGTLLSR QIKGVSCSLD  420
AKLPSKQEVR TEEGSVIAEL GCTPIVLAQD EAVISRNGQD EQVKDDKVDS PNQKADLKIL  480
ISNAENAVSS LNIERDETHH KAVISVQGEQ RQSAKDNEVV CSLIGGGDPS AVDSSEKPSS  540
TEKQTDLLGT VTDGCNGKHV LSKEEAGIKI NGEHEG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	140	144	KKRKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.1G532600.4.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020410506.1	0.0	uncharacterized protein LOC18788538 isoform X2
TrEMBL	A0A251RH74	0.0	A0A251RH74_PRUPE; Uncharacterized protein
STRING	EMJ25790	0.0	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.2	1e-52	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Prupe.1G532600.4.p
Entrez Gene	18788538