PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G530800.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 239aa    MW: 26084.4 Da    PI: 8.3737
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G530800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.55.9e-144793354
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                        ++h+e+ErrRR+riN+ +++Lr+llP+      ++ +Ka+ L ++v+++++L
  Prupe.1G530800.1.p 47 KSHKEAERRRRQRINTHLSTLRTLLPNT-----TRTDKASLLAEVVQHVREL 93
                        79*************************9.....8***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.3874493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-1447103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-114793IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.9E-144796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.27E-124796No hitNo description
SMARTSM003534.4E-135099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2602.2E-4141204No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MLPFLSWSDQ NHYAHDPSLV NLMDGADSIL SPAASMTETS RSAEASKSHK EAERRRRQRI  60
NTHLSTLRTL LPNTTRTDKA SLLAEVVQHV RELRRQAGDL ARQDGGSCCG GSTGSEPWPF  120
PGESDEATVS YCDGEARLLK ATLCCEDRPG LNRDLIQAIR SVQARAIRAE MMTVGGRTKN  180
VVVMQWAGGG GEEEVRALKR ALKAVVENRA SGCGPGRLVL GKKRARVYGS VYEDENEY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G530800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8632570.0DQ863257.1 Prunus persica clone BAC PpN089G02 evergrowing gene locus, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007224658.21e-176transcription factor bHLH30
TrEMBLA6XN041e-175A6XN04_PRUPE; Uncharacterized protein
STRINGEMJ258571e-154(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114412834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.12e-29bHLH family protein