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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.1G519100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | B3 | ||||||||
Protein Properties | Length: 157aa MW: 17736.7 Da PI: 8.8579 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 33.7 | 6.5e-11 | 79 | 149 | 17 | 91 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefe 91 +lp f ++ ++kk + + + + sW v+l ++ ++ +++GW+ Fv+ +gL+ g++vvF+++g++ f+ Prupe.1G519100.1.p 79 SLPVAFSSSLSEKK-LD-KAV-IKSCLGSWCVRL--GRSVDGvLSFEEGWEVFVNHHGLNIGEMVVFEHKGKMVFT 149 56666665554332.22.233.3345579*****..7777776999**********************98877774 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 0.0061 | 69 | 156 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.6E-12 | 77 | 153 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 7.8E-8 | 78 | 149 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 7.31E-9 | 79 | 153 | No hit | No description |
SuperFamily | SSF101936 | 7.85E-11 | 80 | 154 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.404 | 104 | 156 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MLRVFQVFGS WVQQTTYCIR KSAKQTTIVT SAMQTILMLN ILAHNLQLKV LSVGVFKRLV 60 SQIVIYETFD SINQWEEKSL PVAFSSSLSE KKLDKAVIKS CLGSWCVRLG RSVDGVLSFE 120 EGWEVFVNHH GLNIGEMVVF EHKGKMVFTV VAYESW* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.1G519100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021817287.1 | 1e-77 | B3 domain-containing protein REM8-like isoform X1 | ||||
TrEMBL | A0A251RGH0 | 1e-109 | A0A251RGH0_PRUPE; Uncharacterized protein | ||||
STRING | XP_008339452.1 | 6e-26 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14574 | 9 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16210.2 | 8e-09 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.1G519100.1.p |