PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G517200.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 244aa    MW: 27117.2 Da    PI: 10.394
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G517200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.96.4e-1215911191
                        HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefe 91
                        + ++rl+lp  f ++ ++kk  + + +   +   sW v+l   ++ ++   +++GW+ Fv+ +gL+ g++vvF+++g++ f+
  Prupe.1G517200.1.p 15 GFNKRLSLPVAFSSSLSEKK-LD-KAV-IKSCLGSWCVRL--GRSVDGvLSFEEGWEVFVNHHGLNIGEMVVFEHKGKMVFN 91
                        45678*******98886554.33.344.4556689*****..7777776999**********************98877774 PP
2B355.97.9e-18135220385
                         EE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3   3 kvltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkld 85 
                         +++++s+   + + +++p kfa+++g++ ++   ++l+d+sgrsW + ++ + ++ r    +  +kGW +F +an+Lk+gD+++F l+
  Prupe.1G517200.1.p 135 TTMSKSHGDPLhAYMTFPAKFARSNGIVATS--RIILKDPSGRSWPLIISKWESKTRgsyrIATRKGWYKFYEANKLKDGDVCIFNLK 220
                         555555555544779***********99766..6***************8855554445546777********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.869598IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.3E-15596IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-13595IPR015300DNA-binding pseudobarrel domain
CDDcd100171.56E-11895No hitNo description
SMARTSM010191.1E-9898IPR003340B3 DNA binding domain
PfamPF023629.5E-91690IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-19125239IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.0E-18126220IPR015300DNA-binding pseudobarrel domain
CDDcd100176.99E-18132225No hitNo description
SMARTSM010192.9E-12133242IPR003340B3 DNA binding domain
PROSITE profilePS5086312.915134237IPR003340B3 DNA binding domain
PfamPF023623.8E-15146220IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MAGKCSVFFK FLVPGFNKRL SLPVAFSSSL SEKKLDKAVI KSCLGSWCVR LGRSVDGVLS  60
FEEGWEVFVN HHGLNIGEMV VFEHKGKMVF NVVAYESLGS EKEYELQSDK HQHDYKGKRT  120
LKGTASSSSR TLFSTTMSKS HGDPLHAYMT FPAKFARSNG IVATSRIILK DPSGRSWPLI  180
ISKWESKTRG SYRIATRKGW YKFYEANKLK DGDVCIFNLK PVSSKSGSKS THVLEVQITR  240
GGS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G517200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020413753.11e-180B3 domain-containing protein REM8-like
TrEMBLA0A251RGD51e-178A0A251RGD5_PRUPE; Uncharacterized protein
STRINGXP_008357222.11e-58(Malus domestica)
STRINGXP_008377458.13e-63(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14574917
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31680.11e-23B3 family protein