PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G486200.1.p
Common NamePRUPE_ppa005712mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family TALE
Protein Properties Length: 448aa    MW: 49884.1 Da    PI: 6.3402
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G486200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.31.1e-073854182154
                         HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         k +yp++e++++L +++gL+ +q+ +WF N+R +
  Prupe.1G486200.1.p 385 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 418
                         469*****************************87 PP
2ELK28.72.9e-10339360122
                 ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                         ELKh+L+++Y+++++++++E++
  Prupe.1G486200.1.p 339 ELKHELKQGYKEKIVDIREEIL 360
                         9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.5E-18174218IPR005540KNOX1
PfamPF037902.0E-16177217IPR005540KNOX1
SMARTSM012562.0E-29227282IPR005541KNOX2
PfamPF037911.4E-21231281IPR005541KNOX2
PROSITE profilePS512139.969339359IPR005539ELK domain
SMARTSM011886.1E-4339360IPR005539ELK domain
PfamPF037891.0E-6339360IPR005539ELK domain
PROSITE profilePS5007111.726359422IPR001356Homeobox domain
SuperFamilySSF466895.13E-16361424IPR009057Homeodomain-like
SMARTSM003894.7E-11361426IPR001356Homeobox domain
CDDcd000867.10E-12362423No hitNo description
Gene3DG3DSA:1.10.10.604.8E-25366423IPR009057Homeodomain-like
PfamPF059201.3E-17379418IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MAYHNHLSQQ DLPLHHFTDQ TQQQHQPFQS DQHDPNSKPT EPHHPFQPAP NWLNTALLRN  60
YTNADANNNH NNSPNNNGGG GASNFLNLHV TASDSTTSQA SNQWLSQPHR PILHRNHSDV  120
IDDVTAVAGD SMIAATISHD SADLKPDSSL NKTDIVVESG GGGGDGGMIN WQNARHKAEI  180
LAHPLYEPLL SAHVACLRIA TPVDQLPRID AQLAQSQNVV AKYSALGHGM VGDDKELDQF  240
MRHYVLLLCS FKEQLQQHVR VHAMEAVMAC WEIEQSLQSL TGVSPGEGTG ATMSDDEDDQ  300
VDSDANLFDG SMEGHDSMGF GPLIPTESER SLMERVRQEL KHELKQGYKE KIVDIREEIL  360
RKRRAGKLPG DTTSVLKAWW QSHSKWPYPT EEDKARLVQE TGLQLKQINN WFINQRKRNW  420
HSNPSTSTVL KSKRKSNAGE NSSDRFG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.199790.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Maximally expressed in sepals, petals and fully expanded leaves. Also expressed in other flower organs and in developing leaves. Low level expression in stem internodes.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G486200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ7867550.0DQ786755.1 Prunus persica class II knotted-like homeobox protein (Knope3L) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007222132.10.0homeobox protein knotted-1-like 3 isoform X2
SwissprotO041360.0KNAP3_MALDO; Homeobox protein knotted-1-like 3
TrEMBLM5XD000.0M5XD00_PRUPE; Uncharacterized protein
STRINGEMJ233310.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.10.0KNOTTED1-like homeobox gene 3