PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

ERF

Protein Properties

Length: 224aa MW: 24759.7 Da PI: 9.3035

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.1G480400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	57.2	4.2e-18	6	55	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr++ +g+Wv+eIr+p +r++lg+f tae Aa+a+++a+ ++g Prupe.1G480400.1.p 6 KFRGVRQRQ-WGSWVSEIRHP-----LlkRRVWLGTFETAEAAARAYDQAAILMNG 55 89**999.******8.....334********************98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	1.9E-32	5	65	IPR001471	AP2/ERF domain
CDD	cd00018	9.78E-23	6	65	No hit	No description
Pfam	PF00847	3.0E-11	6	55	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.036	6	63	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	5.43E-20	6	65	IPR016177	DNA-binding domain
SMART	SM00380	4.2E-40	6	69	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.7E-10	7	18	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.7E-10	29	45	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MVQSRKFRGV RQRQWGSWVS EIRHPLLKRR VWLGTFETAE AAARAYDQAA ILMNGQNAKT 60 NFPTSNNNNS SGQDTKPTNQ DSPWSPKALS ELLNSKLRKC CKDPSPSLTC LRLDNDNSHI 120 GVWQKRPAGS RASSNWVMRI ELGKKKKHIS DHHGSMCSSS SSSSSSSFSS STSSSMVGLI 180 EAGMSEADQD EEDKLAMQMI EELLNWNYPI PSPTSNVQEG NII*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	5e-17	6	71	14	80	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Found in all organs, mostly in veins, epidermis and trichome bases. Specific expression in lateral root tips. {ECO:0000269\|PubMed:15319479}.

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:15319479}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00527	DAP	Transfer from AT5G25390	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.1G480400.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By wounding in cauline leaves, stems, and siliques, but not in rosette leaves. {ECO:0000269\|PubMed:15319479}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ842595	2e-65	HQ842595.1 Rosa chinensis clone 1 putative DREB protein mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007224520.1	1e-165	ethylene-responsive transcription factor SHINE 2
Swissprot	Q3E958	3e-75	SHN3_ARATH; Ethylene-responsive transcription factor SHINE 3
TrEMBL	M5XID7	1e-163	M5XID7_PRUPE; Uncharacterized protein
STRING	EMJ25719	1e-164	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF576	33	144

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11190.1	1e-65	ERF family protein

Link Out ? help Back to Top
Phytozome	Prupe.1G480400.1.p
Entrez Gene	18791831

Publications ? help Back to Top
Djemal R,Khoudi H Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum). Protoplasma, 2015. 252(6): p. 1461-73 [PMID:25687296] Sadler C, et al. Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition. Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344 [PMID:26965486]