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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.1G454900.2.p | ||||||||
Common Name | PRUPE_ppa025916mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | NAC | ||||||||
Protein Properties | Length: 343aa MW: 38086.9 Da PI: 9.1451 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 176 | 1.1e-54 | 9 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeel+++yL +k+++ +++ ++i++vd++k+ePw+Lp+k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke Prupe.1G454900.2.p 9 LPPGFRFHPTDEELITFYLINKITDATFTG-RAIADVDLNKCEPWELPAKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKE 98 79*************************999.89***************99999************************************** PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++ ++e vg+kktLvfy+grap+gek++Wvmheyr+ Prupe.1G454900.2.p 99 IFNSvTSEMVGMKKTLVFYRGRAPRGEKSNWVMHEYRI 136 **9989999***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-63 | 6 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.143 | 9 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.8E-28 | 10 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MTGEQKEELP PGFRFHPTDE ELITFYLINK ITDATFTGRA IADVDLNKCE PWELPAKAKM 60 GEKEWYFFSL RDRKYPTGVR TNRATNTGYW KTTGKDKEIF NSVTSEMVGM KKTLVFYRGR 120 APRGEKSNWV MHEYRIHSKS AFRTSKDEWV VCRVFQKSAG IKKYPTTQSR AANPYNLEIG 180 PSVVPSPMMQ IGDHQFPYGR NYMTSAELAE ISRVLRNGGS GGGGSSNGTI NVPIQPQFNY 240 PNLGGGGGGF TISGLNLNLG APATQPMLRP MPPPQLHHQG PPAMNPHQQD VMSNGANNNS 300 LGPDHQAGYG AIDMNNNNAN GNGNRFMNME HCVDLDTYWP PY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-54 | 9 | 163 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-54 | 9 | 163 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-54 | 9 | 163 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-54 | 9 | 163 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-54 | 9 | 163 | 20 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-54 | 9 | 163 | 20 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-54 | 9 | 163 | 20 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-54 | 9 | 163 | 20 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-54 | 9 | 163 | 20 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-54 | 9 | 163 | 20 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-54 | 9 | 163 | 20 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-54 | 9 | 163 | 20 | 174 | NAC domain-containing protein 19 |
4dul_A | 2e-54 | 9 | 163 | 17 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-54 | 9 | 163 | 17 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00277 | DAP | Transfer from AT2G24430 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.1G454900.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007226507.1 | 0.0 | NAC domain-containing protein 92 | ||||
Refseq | XP_020416949.1 | 0.0 | NAC domain-containing protein 92 | ||||
Refseq | XP_020416958.1 | 0.0 | NAC domain-containing protein 92 | ||||
TrEMBL | M5XQA3 | 0.0 | M5XQA3_PRUPE; Uncharacterized protein | ||||
STRING | EMJ27706 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24430.2 | 1e-109 | NAC domain containing protein 38 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.1G454900.2.p |
Entrez Gene | 18790122 |