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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.1G434000.1.p | ||||||||
Common Name | PRUPE_ppa021226mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | bHLH | ||||||||
Protein Properties | Length: 261aa MW: 28819.6 Da PI: 8.6945 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26 | 1.7e-08 | 168 | 208 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P +K++ a++L +A++Y+k L Prupe.1G434000.1.p 168 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 208 699*****************87.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.434 | 159 | 208 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.6E-13 | 160 | 218 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.88E-14 | 163 | 218 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.5E-13 | 165 | 214 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.7E-6 | 169 | 208 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.59E-6 | 182 | 213 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MDIVQLKSEE QMEMMMTMQM DKISELCGAY NDVSDLPPSD HTFSTITTTT TSPNSITSNT 60 SISMPHYTDQ QNPQNIPSPN SQSFLNLPTI PTIPSTISFS NTTNLTDQTS NSSNGFLPSS 120 QKRTSMAAMR EMIFRIAAMQ PIHIDPESVK PPKRRNVKIS KDPQSVAARH RRERISERIR 180 ILQRLVPGGT KMDTASMLDE AIHYVKFLKS QIQTLERAAA NRPTGIGFPV AMSSGSYGLH 240 SVAKAYQASC HENVQHFGDA * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.1G434000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP689428 | 0.0 | KP689428.1 Prunus pseudocerasus isolate Unigene7666 bHLH transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007224416.1 | 0.0 | transcription factor HEC1 | ||||
TrEMBL | M5Y1Q5 | 0.0 | M5Y1Q5_PRUPE; Uncharacterized protein | ||||
STRING | EMJ25615 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF651 | 34 | 141 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67060.1 | 2e-42 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.1G434000.1.p |
Entrez Gene | 18788678 |