PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

ERF

Protein Properties

Length: 176aa MW: 19844.9 Da PI: 9.8061

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.1G432000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	55.5	1.4e-17	48	97	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r +k +g+WvAeIr+p +kr r++lg++ t+ Aa+a++ a +l+g Prupe.1G432000.1.p 48 QYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYTTPVAAARAYDTAVFYLRG 97 7****99.******9...336***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	1.8E-30	47	106	IPR001471	AP2/ERF domain
CDD	cd00018	4.70E-28	47	107	No hit	No description
Pfam	PF00847	1.4E-10	48	97	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.313	48	105	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	4.71E-21	48	106	IPR016177	DNA-binding domain
SMART	SM00380	2.4E-37	48	111	IPR001471	AP2/ERF domain
PRINTS	PR00367	8.2E-12	49	60	IPR001471	AP2/ERF domain
PRINTS	PR00367	8.2E-12	87	107	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009414	Biological Process	response to water deprivation
GO:0042538	Biological Process	hyperosmotic salinity response
GO:0005634	Cellular Component	nucleus
GO:0001078	Molecular Function	transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MEGEYCCSSS SSSSTTTTTS IEKRKQRQNQ QQQQQVGGNH DHRHQEKQYR GIRMRKWGKW 60 VAEIREPNKR SRIWLGSYTT PVAAARAYDT AVFYLRGPSA RLNFPELVFQ EDGQQLHDMS 120 AASIRKKATE VGAKVDAVET AHRSPISQSK TTSSLVNSQK PDLNKYPDPE NSDEN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	6e-16	47	108	4	66	ATERF1
3gcc_A	6e-16	47	108	4	66	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.1G432000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007223577.1	1e-130	ethylene-responsive transcription factor ERF011
Refseq	XP_007223578.1	1e-130	ethylene-responsive transcription factor ERF011
Refseq	XP_021820292.1	1e-130	ethylene-responsive transcription factor ERF011-like
Swissprot	Q9SNE1	3e-51	ERF11_ARATH; Ethylene-responsive transcription factor ERF011
TrEMBL	A0A314ZEE7	1e-129	A0A314ZEE7_PRUYE; Ethylene-responsive transcription factor ERF011
TrEMBL	M5XH14	1e-129	M5XH14_PRUPE; Uncharacterized protein
STRING	EMJ24776	1e-130	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1290	32	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50260.1	2e-52	cooperatively regulated by ethylene and jasmonate 1

Link Out ? help Back to Top
Phytozome	Prupe.1G432000.1.p
Entrez Gene	18789186

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Shen PC,Hour AL,Liu LD Microarray meta-analysis to explore abiotic stress-specific gene expression patterns in Arabidopsis. Bot Stud, 2017. 58(1): p. 22 [PMID:28510204]