PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

HD-ZIP

Protein Properties

Length: 312aa MW: 35034 Da PI: 6.548

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.1G416800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.1	7.4e-19	152	206	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq +Le+ F+++ +++ +++++LA+kl+L rqV vWFqNrRa+ k Prupe.1G416800.1.p 152 RKKLRLSKEQSATLEDSFREHTTLNPKQKQDLARKLNLRPRQVEVWFQNRRARTK 206 788899***********************************************98 PP
2	HD-ZIP_I/II	121.7	3.6e-39	152	239	1	88
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +kk+rlskeq+++LE+sF+e+++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E d+e Lk+++++lkeen+rL+ke +eL+ Prupe.1G416800.1.p 152 RKKLRLSKEQSATLEDSFREHTTLNPKQKQDLARKLNLRPRQVEVWFQNRRARTKLKQTEADCELLKKCCETLKEENRRLHKELQELK 239 69*************************************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.27E-18	142	209	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.427	148	208	IPR001356	Homeobox domain
SMART	SM00389	1.1E-16	150	212	IPR001356	Homeobox domain
CDD	cd00086	4.20E-16	151	209	No hit	No description
Pfam	PF00046	2.9E-16	152	206	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.5E-17	152	206	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	183	206	IPR017970	Homeobox, conserved site
Pfam	PF02183	1.8E-8	208	242	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	9.3E-17	208	251	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MSFDEACNTG LGLSLGCRDS PDHDHTNLQA PPDHHHHHHQ NTYKNKQIQL KYDHLLPSLT 60 LGPSAASKIE EAESTDLHQA VAAQEQDSSP CSGAFSSFSN SSSFKRDREL GGEEIEVEVE 120 VEVEVEEERV VNITSSRASE ELYEQDHEGS PRKKLRLSKE QSATLEDSFR EHTTLNPKQK 180 QDLARKLNLR PRQVEVWFQN RRARTKLKQT EADCELLKKC CETLKEENRR LHKELQELKL 240 MKQTATAAAA VPPFYMQFPT ATLTMCPSCE KICNGGDHHN HHGSSTSSFL IGSKPAHLIF 300 NPFSTHPSTA C*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	200	208	RRARTKLKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppe.1643	0.0	fruit

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.1G416800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007222987.1	0.0	homeobox-leucine zipper protein HAT22
TrEMBL	M5XFE8	0.0	M5XFE8_PRUPE; Uncharacterized protein
STRING	EMJ24186	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1144	33	107

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	5e-67	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Prupe.1G416800.1.p
Entrez Gene	18789505