PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 163aa MW: 18625.1 Da PI: 7.1884

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.1G411200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	118	5.5e-37	6	105	2	101
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 CaaC+++r+kC++dC +apyfpa++ ++f n+hklFG+ +++k+l+++++++r+ am s+ eAe rardPv G+++ i++l +++++++ Prupe.1G411200.1.p 6 CAACRFQRKKCTEDCLMAPYFPATRFQQFLNAHKLFGVGKITKTLNSVSPQQRSSAMYSVKAEAEYRARDPVGGCYNEIKSLLWKIRTTED 96 ***************************************************************************************** PP DUF260 93 elallkeel 101 el++++++l Prupe.1G411200.1.p 97 ELQHVHSQL 105 **99985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.066	4	105	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.5E-34	6	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MKHQTCAACR FQRKKCTEDC LMAPYFPATR FQQFLNAHKL FGVGKITKTL NSVSPQQRSS 60 AMYSVKAEAE YRARDPVGGC YNEIKSLLWK IRTTEDELQH VHSQLCMFRA GGENAMAHPL 120 DGYEYNVVQD VEYDSQLHHQ LQQNIVQEQS GVVENHQEQC LI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-27	6	111	12	117	LOB family transfactor Ramosa2.1
5ly0_B	4e-27	6	111	12	117	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.1G411200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007224730.2	1e-121	LOB domain-containing protein 22
Swissprot	Q9LRW1	5e-37	LBD22_ARATH; LOB domain-containing protein 22
TrEMBL	A0A251RBT1	1e-120	A0A251RBT1_PRUPE; Uncharacterized protein
STRING	EMJ25929	1e-111	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF39760	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	2e-39	LOB domain-containing protein 22

Link Out ? help Back to Top
Phytozome	Prupe.1G411200.1.p

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]