PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Expression |

Cis-element |

Regulation |

Basic Information? help Back to Top

TF ID

Prupe.1G398700.2.p

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

DBB

Protein Properties

Length: 271aa MW: 29116.1 Da PI: 4.347

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.1G398700.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	29.7	1.4e-09	4	43	4	37
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 + C+ +++ ++lfC+ ++ +lC +C +++H H Prupe.1G398700.2.p 4 KLCDSCKSATATLFCRADSAFLCVNCDSKIHAAnklasrH 43 68*****************************554455555 PP
2	zf-B_box	28.4	3.3e-09	46	91	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 + C+ +e+ +++ C+ ++ lC +C +H+ H++vp+ Prupe.1G398700.2.p 46 VWLCEVCEQAPAHVTCKADDAALCVTCDRDIHSAnplsrrHERVPV 91 679****************************6689999999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.893	1	48	IPR000315	B-box-type zinc finger
SMART	SM00336	1.4E-15	1	48	IPR000315	B-box-type zinc finger
Pfam	PF00643	7.3E-7	4	43	IPR000315	B-box-type zinc finger
CDD	cd00021	1.88E-9	5	48	No hit	No description
PROSITE profile	PS50119	10.836	44	91	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.8E-7	46	91	IPR000315	B-box-type zinc finger
CDD	cd00021	2.97E-9	47	91	No hit	No description
SMART	SM00336	4.0E-11	49	91	IPR000315	B-box-type zinc finger

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MASKLCDSCK SATATLFCRA DSAFLCVNCD SKIHAANKLA SRHARVWLCE VCEQAPAHVT 60 CKADDAALCV TCDRDIHSAN PLSRRHERVP VTPFYDSGNS AANSAPVVKS VVNFLDDRYF 120 SDVDGQDAET EVSREEAEAA SWLLPNPKAM ENPDLNSGEY FLPEMDPYLD LDYGHVDPKL 180 EDAQEQNSCG TDGVVPVQSK SVQPQLVNDH SFEIDFSAAS KPYVYGFHAQ CLSQSVSSSS 240 MDVSVVPDGN TTMTDRGGGV NTSGGSDFIG *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppe.1733	0.0	fruit\| leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.1G398700.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU939303	0.0	EU939303.1 Prunus persica CONSTANS-like protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007222404.1	0.0	zinc finger protein CONSTANS-LIKE 4
Swissprot	Q940T9	1e-102	COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBL	A0A251RB67	0.0	A0A251RB67_PRUPE; Uncharacterized protein
STRING	EMJ23603	0.0	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24930.1	2e-95	CONSTANS-like 4

Link Out ? help Back to Top
Phytozome	Prupe.1G398700.2.p