PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Prupe.1G388300.1.p

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

Protein Properties

Length: 102aa MW: 11245.8 Da PI: 9.7826

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.1G388300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	32.2	2e-10	12	57	45	91
EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 45 sWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefe 91 sW v++ ++ ++ +++GW+eFv+ +gLk g++++Fk++g++ f+ Prupe.1G388300.1.p 12 SWHVRV--GRTVDGvLSFEEGWEEFVNHHGLKLGEILIFKHNGKRAFN 57 899999..6666665999**********************98877663 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	10.898	1	64	IPR003340	B3 DNA binding domain
CDD	cd10017	1.83E-8	12	53	No hit	No description
Pfam	PF02362	2.2E-7	12	58	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.57E-10	12	61	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	6.8E-11	12	62	IPR015300	DNA-binding pseudobarrel domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 102 aa Download sequence Send to blast
MDKAVIKSCL GSWHVRVGRT VDGVLSFEEG WEEFVNHHGL KLGEILIFKH NGKRAFNVVA 60 YEALGREKRK KPSEATASST SRTSFACTMK KSPDHPTCTN P*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.1G388300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020416436.1	6e-71	B3 domain-containing protein At5g18000-like isoform X2
TrEMBL	A0A251R9U6	1e-69	A0A251R9U6_PRUPE; Uncharacterized protein
STRING	XP_008339452.1	2e-21	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14574	9	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	2e-08	B3 family protein

Link Out ? help Back to Top
Phytozome	Prupe.1G388300.1.p