PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G342700.1.p
Common NamePRUPE_ppa001923mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 741aa    MW: 82665.2 Da    PI: 5.5519
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G342700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.11.3e-07133155427
                         ---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                         ++C ff++ G+C  GdrC F+Hgp
  Prupe.1G342700.1.p 133 VPCIFFQK-GQCLKGDRCAFSHGP 155
                         69******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.8033564IPR000571Zinc finger, CCCH-type
SMARTSM003560.00183663IPR000571Zinc finger, CCCH-type
PfamPF156634.3E-113690No hitNo description
PROSITE profilePS5010310.4656692IPR000571Zinc finger, CCCH-type
SMARTSM003560.516891IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-6129155IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422129156IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5130154IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-5133155IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-5134155IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 741 aa     Download sequence    Send to blast
MVVGAQPQPQ PQQQQQQQQQ KPTQQPETTA EEEALKRNTD CVYFLASPLT CKKGSECEYR  60
HSEYARVNPR DCWYWLNGNC LNLKCAFRHP PLDGLLGSPA ATSAGPSLPL SHTVATPTTP  120
ATHVTYNSSK QAVPCIFFQK GQCLKGDRCA FSHGPNPLTG SKVPQAPATT HGTEPSSLKK  180
VFGGLQKCTQ ELKVPQVSAS KSVGVPLQAK PAPKFQTVPV RNGVSIERNV PSTKALDDDA  240
RRYKTTSVPP VSNGDSTSQA NHLLQAHVAD HHGYQNGKDA DEHLRESSPG FDVLVDDELG  300
DSDYYHGEDQ FGRTRGHEGR NLNSVNEYDL DRPADYNSMA DVDRERFCDP RGYDPYDHMQ  360
GQYAWDQHRA SSERQLVGPT RLERRGYRKS DSPENIDELD LRHRLSKHRR VNGLRSIVSH  420
DYALDGHVEE RKNRPRRDSQ QLPSHEGSLS SRLHGRIKLP GGSPPVNGGD LHQEREVDRG  480
RSRGRLSPRR APISSQQGRL RDRIKGRVED YNNEERNFGA HRSRREIMDD RSDDFSRPKR  540
LSDLKGGKDG ENKEQSYLGK RKNVMDNYQQ SEGDISFEGP KPLSEILKRK REAEAAASGS  600
GKSFVNKQGN NQRESRVSDP GDSEFAVAEV KSSLPTVAKE EPKYATEDAV GAEDEKTDVA  660
HGQSSQGHNA GELEEGMIDD EPLEDQEPEA EDQREGDYDY EQGEDGDYNY EEGENADGEE  720
EYMEDEDGDD FAKKIGVMFS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1430437RKNRPRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.66050.0fruit
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G342700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007221874.10.0zinc finger CCCH domain-containing protein 17
TrEMBLM5XNI50.0M5XNI5_PRUPE; Uncharacterized protein
STRINGEMJ230730.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF92273137