PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G341100.1.p
Common NamePRUPE_ppb002474mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 608aa    MW: 65299.1 Da    PI: 9.5224
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G341100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.2e-0582104123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         + C+ C+k F r  nL+ H r H
  Prupe.1G341100.1.p  82 FICEVCNKGFQREQNLQLHRRGH 104
                         89*******************88 PP
2zf-C2H213.10.00029158180123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC++C+k++  +s+ k H +t+
  Prupe.1G341100.1.p 158 WKCEKCSKRYAVQSDWKAHSKTC 180
                         58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.8E-681104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.39E-781104No hitNo description
PROSITE profilePS5015710.9982104IPR007087Zinc finger, C2H2
PfamPF121713.0E-582104IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.005282104IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028084104IPR007087Zinc finger, C2H2
SMARTSM00355160123153IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.4E-5146179IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.39E-7153178No hitNo description
SMARTSM00355130158178IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MAAASSSIPF FGSTSSREET QSQMTSTLQQ HSSATPSSNT TAAAAAAAPP PQKKRRNQPG  60
NPNPDAEVIA LSPKTLMATN RFICEVCNKG FQREQNLQLH RRGHNLPWKL KQKTTKEPRR  120
KVYLCPEPTC VHHDPSRALG DLTGIKKHFS RKHGEKKWKC EKCSKRYAVQ SDWKAHSKTC  180
GTREYRCDCG TLFSRRDSFI THRAFCDALA QESARHPSSL NTMGGQLYGN NHMSLGLSQI  240
PSLQNQTHLP NNMLRLGNAG GAKYEHLITP SNPSSFGSQA MPNSSNFFMR DIANQQGFQD  300
QHQFPSKAAL HGLMQLPDLQ SNGNNNNSPS STSAANLFNL SFFSNNSTSS SLTPPDHQFS  360
DGNGGGQGFS MGAGDHHTMG SATLPSLYGN SMQHESNIAS HMSATALLQK AAQMGSTTST  420
ESSSLLRGLG NSSTRAAKSG RQLVAAPSTV GVSFSGDHHS GGEQQHLRSS QQVDNENHLQ  480
GLMNSLASGA SSVFGGGGVH GQDHNSFGGF SSGSTGTRVN AMDQQHNNTN YDEAKLHQNL  540
GVNFGGSDKL TLDFLGVGGM VQNMSGGHGY SQRDHHQQHH GINMIGTLDP DLKSAQTRQP  600
FGGTAMQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-34154221370Zinc finger protein JACKDAW
5b3h_F2e-34154221370Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G341100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4550951e-129AM455095.1 Vitis vinifera contig VV78X055432.12, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007226470.10.0protein indeterminate-domain 4, chloroplastic
SwissprotQ8GYC11e-137IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBLM5XP200.0M5XP20_PRUPE; Uncharacterized protein
STRINGEMJ276690.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15363397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-117indeterminate(ID)-domain 5
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]