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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Prupe.1G341000.1.p |
Common Name | PRUPE_ppa002931mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family |
C2H2 |
Protein Properties |
Length: 621aa MW: 66546.9 Da PI: 8.84 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Prupe.1G341000.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 16.1 | 3.2e-05 | 74 | 96 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ C+ C+k F r nL+ H r H
Prupe.1G341000.1.p 74 FICEVCNKGFQREQNLQLHRRGH 96
89*******************88 PP
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2 | zf-C2H2 | 13 | 0.0003 | 150 | 172 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+kC++C+k++ +s+ k H +t+
Prupe.1G341000.1.p 150 WKCEKCSKRYAVQSDWKAHSKTC 172
58*****************9998 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 621 aa
Download sequence Send
to blast |
MAASSSSVAP LFGIREEDQN QQMKQQHSST PPTSSTAAAA APPQKKKRNQ PGTPNPEAEV 60 IALSPKTLMA TNRFICEVCN KGFQREQNLQ LHRRGHNLPW KLKQKTTKEP KRKVYLCPEP 120 TCVHHDPSRA LGDLTGIKKH FSRKHGEKKW KCEKCSKRYA VQSDWKAHSK TCGTREYRCD 180 CGTLFSRRDS FITHRAFCDA LAQESARHPP SLSTIGSSLY GGSLSNTGLG LSHQVVGPPQ 240 ISSLQQDHSQ SSTAADILRL GGAGGAGAAR TGQFDHLLGS SFRPAAQSSA SFFLTAADQS 300 TQQQYHDQDQ DKSFQGLMQF SDNHHHLHQN NNNSNNPPHH HSAGANLFSL PFLSNNTTNT 360 TNNNNSATNN NLLISPDHFN TNVNGTTTAA GGSEGSHNLF SGHIVGGDHI SSGIPSLYST 420 NSNINNNNQQ QQHHASMAHM SATALLQKAA QMGSTNSSNN TTASLLRSFG SSSSATAKSD 480 RPGALVPSSL GGMFGSDQQD QSHLQDLMNS FANTGGSSIF VNASFGGYDA ATANRAINME 540 ETKLQQQNSL GVSNIGGADR LTRDFLGVGQ VVRNMSGGFS HQRSEHHSEQ QHGMDMSSLD 600 SESNAAAPSS QSFGGGGNFQ *
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Highly expressed in leaf tissues. {ECO:0000305|PubMed:22898356}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AM455095 | 1e-122 | AM455095.1 Vitis vinifera contig VV78X055432.12, whole genome shotgun sequence. |