PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.1G313200.1.p | ||||||||
Common Name | PRUPE_ppa010885mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | bHLH | ||||||||
Protein Properties | Length: 233aa MW: 25993.1 Da PI: 6.5092 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25 | 3.5e-08 | 117 | 164 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L+ l+P + k + a +L ++ Y++sLq Prupe.1G313200.1.p 117 SHSLAERVRREKINERLRCLQNLVPGC----YKTMGMAVMLDVVISYVQSLQ 164 8*************************8....355888999999999999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 6.68E-11 | 111 | 168 | No hit | No description |
SuperFamily | SSF47459 | 1.31E-16 | 111 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.212 | 113 | 163 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.0E-16 | 113 | 174 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.3E-5 | 117 | 164 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.3E-8 | 119 | 169 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:2000488 | Biological Process | positive regulation of brassinosteroid biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MELIDSLCEL ENLSANHHEI MALSNGMSFS DHQRQTNHLP LNFIHDNIIQ SFSHSDDPNH 60 DVLVAHSTSL TGDFAQESEK GKPLGGRKRK RNKIDKDGEK LKEVIHVRAK RGQATDSHSL 120 AERVRREKIN ERLRCLQNLV PGCYKTMGMA VMLDVVISYV QSLQNQIEFL SMKLSAASVY 180 YDFNAPGVDA LDTMQQLGTN NAYGEVQEEM VRSGGYGGGL SNYNNNNSTW PI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.1G313200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007223899.1 | 1e-175 | transcription factor bHLH75 | ||||
TrEMBL | M5XU04 | 1e-174 | M5XU04_PRUPE; Uncharacterized protein | ||||
STRING | EMJ25098 | 1e-174 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14813 | 11 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25330.1 | 2e-50 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.1G313200.1.p |
Entrez Gene | 18789869 |