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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Prupe.1G305900.1.p |
| Common Name | PRUPE_ppa006243mg |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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| Family |
RAV |
| Protein Properties |
Length: 422aa MW: 45813.1 Da PI: 9.2028 |
| Description |
RAV family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Prupe.1G305900.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 43.2 | 9.7e-14 | 80 | 128 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s+ykGV + +grW A+I++ ++r++lg+f ++eAaka++ a+++++g
Prupe.1G305900.1.p 80 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAAKAYDVAAQRFRG 128
89****9888.8*********3.....5**********99*************98 PP
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| 2 | B3 | 96.5 | 1.7e-30 | 219 | 332 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT..................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkang 73
f+k+ tpsdv+k++rlv+pk++ae+h gg+ +++ l +ed g++W+++++y+++s++yvltkGW++Fvk+++
Prupe.1G305900.1.p 219 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqsgnnfnnhtststsGGSACKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKN 309
89****************************999999888888886677799**************************************** PP
--TT-EEEEEE-SSSEE..EEEE CS
B3 74 LkegDfvvFkldgrsefelvvkv 96
Lk+gD+v F+++ ++++l++ +
Prupe.1G305900.1.p 310 LKAGDIVSFQRSTGQDKQLYIDW 332
**********8766777777765 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0048573 | Biological Process | photoperiodism, flowering |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 422 aa
Download sequence Send
to blast |
MDGMSLSSTE ESTTSDSISI SPNNHLLPTT IAVSPIAKSS PHADSLCRLG SGASSVILDS 60
EISSGGGGGI EAESRKLPSS KYKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEDEAAKAYD 120
VAAQRFRGRD AVTNFKPSPT GTGTDDDDES DDVEAAFLNT HSKSEIVDML RKHTYNDELE 180
QSKRNNYGFL DANGKRARAH GPLGPFGSDR VPKAREQLFE KAVTPSDVGK LNRLVIPKQH 240
AEKHFPLQSG NNFNNHTSTS TSGGSACKGV LLNFEDVGGK VWRFRYSYWN SSQSYVLTKG 300
WSRFVKEKNL KAGDIVSFQR STGQDKQLYI DWKPRMNVNN NNNSGVGSNP VPVQQVQMVR 360
LFGVNIFKIP GSGGGAVVDA ATAAIGGGSC NNNINNVGKR MREMELLELE FSKKPRIIGA 420
L*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:18718758}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}. |
| Publications
? help Back to Top |
- Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Choi D, et al.
iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
Mol Plant, 2014. 7(5): p. 792-813
[PMID:24380880] - Sgamma T,Jackson A,Muleo R,Thomas B,Massiah A
TEMPRANILLO is a regulator of juvenility in plants.
Sci Rep, 2014. 4: p. 3704
[PMID:24424565] - Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
RAV genes: regulation of floral induction and beyond.
Ann. Bot., 2014. 114(7): p. 1459-70
[PMID:24812253] - Marín-González E, et al.
SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
Plant Physiol., 2015. 169(2): p. 1214-24
[PMID:26243615] - Matías-Hernández L, et al.
TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
Plant Physiol., 2016. 170(3): p. 1624-39
[PMID:26802039]
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