PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.1G297200.3.p | ||||||||
Common Name | PRUPE_ppa003619mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | bHLH | ||||||||
Protein Properties | Length: 562aa MW: 60159.8 Da PI: 4.9998 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.2 | 7e-09 | 377 | 425 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq Prupe.1G297200.3.p 377 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 425 58*************************9....556*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 7.46E-17 | 372 | 443 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.28E-11 | 372 | 429 | No hit | No description |
PROSITE profile | PS50888 | 15.485 | 374 | 424 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-16 | 375 | 441 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.1E-6 | 377 | 425 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.7E-10 | 380 | 430 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 562 aa Download sequence Send to blast |
MDMGDQDKFE LENRNEDPMN YSPGMAPDWR FGGSNLTNTS VGLVSTGNSM AVSKGDLVGS 60 SSRPSASMVD SFNPTLWDHP TNSQDLGGFC DINGQTSAST SDTIGIRKGI PVSLRSGIDR 120 PLEMCWNPPN SMLKGGIFLP NGPGMLPQSL SQFPADSAFI ERAARFSCFN GGSFSDMLNP 180 FGVPESMSLY SRGGGMMHWT QEVVAGNGSN AVSCAQSQRN EINGGDASRD VTLPIELGTT 240 EGSPLKNEKK SESLVKSHDE AKHTVGGSGN ESDEADFSGG AGQEEPSMLE GTGVEPSSKG 300 SKKRKRSGQA NELDQAHAQQ PGESAQDASE FQQKGEQHPA STTNKTTGKQ SKQGSQASDP 360 PKEEYIHVRA RRGQATNSHS LAERVRREKI SERMKFLQDL VPGCSKVTGK AVMLDEIINY 420 VQSLQRQVEF LSMKLATVNP RLDFNIEGLL TKDILQSRVG PSSTLGFSPD MPIAYPQLHP 480 SQSGLIQADL PGMGSPSDIL RRAMSSQMTP MTGGFKEPSQ LPNVWEDELH NVVQMSYGAS 540 TPTGSQDVDG SGTPGQMKVE L* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 301 | 306 | KKRKRS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.1G297200.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007225728.1 | 0.0 | transcription factor bHLH49 isoform X2 | ||||
TrEMBL | M5XLG4 | 0.0 | M5XLG4_PRUPE; Uncharacterized protein | ||||
STRING | EMJ26927 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68920.2 | 1e-135 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.1G297200.3.p |
Entrez Gene | 18793311 |