PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G294200.1.p
Common NamePRUPE_ppa008387mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 336aa    MW: 36759.5 Da    PI: 6.3549
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G294200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.34.9e-124583244
                        HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHH CS
                 HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiL 44
                        r +h+  E+rRR++iN++f+ Lr+l+P++    ++K + a+ L
  Prupe.1G294200.1.p 45 RSKHSVTEQRRRSKINERFQILRDLIPHS----DQKRDTASFL 83
                        899*************************9....5665555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.0E-1842116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.3664397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-1444120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-94584IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.19E-114599No hitNo description
SMARTSM003538.1E-649100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MRTAAKGNQE EDDYDDEEFG SRKEGPSSNS NSKDAKNNDK ASAIRSKHSV TEQRRRSKIN  60
ERFQILRDLI PHSDQKRDTA SFLLEVLLFY VQYLQEKVHK YEGSYQGWSP EPTKLMPWRN  120
SHWRVQSFVG HPQAGKNDTG AVSPFPGKFD ENGISITPNM LANSTQNPVE SDPSRDVASK  180
IMDRQPEIVN KAIPLPMPLP VNMAPVRSDG ILAHPLQGPV SDAQSTQCPT TSASDALNQQ  240
EELTIEGGTI SISSVYSQGL LNSLNQALQS AGVDLSQASV SVQIDLGNRA NRGLSSGTPA  300
SKDHEIPHSS NQTVAHFRDA GSGEDSDQAH KRMKT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.51813e-53fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G294200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007222565.10.0transcription factor BIM2
SwissprotQ9CAA41e-116BIM2_ARATH; Transcription factor BIM2
TrEMBLA0A251R5170.0A0A251R517_PRUPE; Uncharacterized protein
STRINGEMJ237640.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17303382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-108BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]