PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.1G280700.2.p | ||||||||
Common Name | PRUPE_ppa004312mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | WRKY | ||||||||
Protein Properties | Length: 368aa MW: 40744.8 Da PI: 8.3119 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 108.5 | 3.1e-34 | 91 | 147 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgynWrKYGqK+vkgsefprsYY+Ct+++Cpvkkkvers d++++ei+Y+geHnhe Prupe.1G280700.2.p 91 DDGYNWRKYGQKQVKGSEFPRSYYKCTHSNCPVKKKVERSI-DGQITEIIYKGEHNHE 147 8****************************************.***************8 PP | |||||||
2 | WRKY | 108.2 | 4e-34 | 256 | 314 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct++ C+v+k+ver+++dpk+v++tYeg+Hnh+ Prupe.1G280700.2.p 256 LDDGYRWRKYGQKVVKGNPYPRSYYKCTFPACNVRKHVERASTDPKAVITTYEGKHNHD 314 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.9E-30 | 85 | 149 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.07E-26 | 88 | 149 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.1E-36 | 90 | 148 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 24.191 | 90 | 149 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.2E-27 | 91 | 147 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.0E-37 | 241 | 316 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-29 | 248 | 316 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 37.574 | 251 | 316 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.7E-39 | 256 | 315 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.3E-26 | 257 | 314 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MTHQQALAQV TAQAAQSSSY FHIPTEYSSS LSTAPATSLT QLPAFTSDST APQEMPSGAA 60 DSGVVLKESS DISHSDQRSQ PSSFIVDKPN DDGYNWRKYG QKQVKGSEFP RSYYKCTHSN 120 CPVKKKVERS IDGQITEIIY KGEHNHERPQ SKRAKDSGNP IGNIQANPDL ASQVHGGHLS 180 KSKKGQESSQ ATHDHLSGTS DSEEVGDAET RVDEKDEDQP DPKRRNTEVR AEPASSHRTV 240 TEPRIIVQTT SEVDLLDDGY RWRKYGQKVV KGNPYPRSYY KCTFPACNVR KHVERASTDP 300 KAVITTYEGK HNHDVPASKT GSHYAANNNA LNLRAVNAGT EKINKMDLRN NDQQPIARLR 360 LKEEQIT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-43 | 91 | 317 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 2e-43 | 91 | 317 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00260 | DAP | Transfer from AT2G03340 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.1G280700.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007222872.1 | 0.0 | probable WRKY transcription factor 3 | ||||
Swissprot | Q9ZQ70 | 1e-147 | WRKY3_ARATH; Probable WRKY transcription factor 3 | ||||
TrEMBL | A0A251R4I4 | 0.0 | A0A251R4I4_PRUPE; Uncharacterized protein | ||||
TrEMBL | M5XF34 | 0.0 | M5XF34_PRUPE; Uncharacterized protein | ||||
STRING | EMJ24071 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03340.1 | 1e-135 | WRKY DNA-binding protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.1G280700.2.p |
Entrez Gene | 18789223 |
Publications ? help Back to Top | |||
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