PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G276300.1.p
Common NamePRUPE_ppa025260mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 479aa    MW: 52900.3 Da    PI: 6.692
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G276300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.3e-16170215147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg W + Ed +l+++v+++G+ +W++Ia+++  gR++k+c++rw++ 
  Prupe.1G276300.1.p 170 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 215
                         899*****************************.***********996 PP
2Myb_DNA-binding54.13.6e-17222265146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         r ++T+eE+++l +a++ +G++ W+ Iar ++ gRt++ +k++w+ 
  Prupe.1G276300.1.p 222 RRAFTEEEEDRLMQAHRVYGNK-WAMIARLFP-GRTDNAVKNHWHV 265
                         678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.302165216IPR017930Myb domain
SuperFamilySSF466894.12E-28169263IPR009057Homeodomain-like
SMARTSM007172.9E-14169218IPR001005SANT/Myb domain
PfamPF002491.0E-15170215IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-25171223IPR009057Homeodomain-like
CDDcd001675.56E-13173214No hitNo description
PROSITE profilePS5129426.783217271IPR017930Myb domain
SMARTSM007175.8E-14221269IPR001005SANT/Myb domain
PfamPF002494.4E-14222264IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-20224270IPR009057Homeodomain-like
CDDcd001674.67E-11224264No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MLTISICDKK GNEGMANNGA IYVTENPNAF SCFSSAPSFS SSSPSCSMGM VYADMGSLSL  60
SSNYGVVSSV SSQESSYISK LSEVENGRGF WGFPPMGNCN NRSSEDYHHN TDIGDGKGSD  120
SSSDHESGEN NQTCMNDQKA NLINHEKYPN ENVVIGGKET ESGQSKHCAR GHWRPAEDSK  180
LKELVALYGP QNWNLIAEKL EGRSGKSCRL RWFNQLDPRI NRRAFTEEEE DRLMQAHRVY  240
GNKWAMIARL FPGRTDNAVK NHWHVIMARK YREQSSAYRR RKLSQTVYRR MEEDPSFNVS  300
RSTEPPSYCS LNLPHNGGLS NSTLSPFSYG TSYNGVVGWG VDYYGSNGSP NMTSAEEEET  360
IPSKKVLPFE FFPGTKRNEG VMGMVSQSRS WDSSSDIEGH LCNLHPHHQP YMMAMQQANY  420
HNLLHSYSDS SVSASPRQVS ASKPSPSAAA AADEDRVGGS HHETLPPPFI DFLGVGAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-331702707107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G276300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007226530.20.0myb-like protein AA
TrEMBLA0A251R4770.0A0A251R477_PRUPE; Uncharacterized protein
STRINGEMJ277290.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.13e-75myb domain protein 105