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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.1G224000.1.p | ||||||||
Common Name | PRUPE_ppa000516mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | CAMTA | ||||||||
Protein Properties | Length: 995aa MW: 110905 Da PI: 5.7034 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 176.4 | 3.8e-55 | 12 | 127 | 2 | 116 |
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 l+e ++rwlk+ e++ iL+n+ek++l++e++++p+sgsl+L+n++++r+fr+DG++w+kkkdg+tv E+he+LKvg+ e+l+cyYah+e+n Prupe.1G224000.1.p 12 LQEaQTRWLKPAEVLYILQNHEKFKLASEPPQQPSSGSLFLFNKRVLRFFRRDGHHWRKKKDGRTVGEAHERLKVGNAETLNCYYAHGENN 102 55669************************************************************************************** PP CG-1 92 ptfqrrcywlLeeelekivlvhyle 116 p+fqrr+yw+L+ ++e+ivlvhy+e Prupe.1G224000.1.p 103 PNFQRRSYWMLDPAYEHIVLVHYRE 127 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 81.074 | 8 | 134 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 4.5E-76 | 11 | 129 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 4.0E-48 | 14 | 127 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 1.1E-6 | 432 | 519 | IPR013783 | Immunoglobulin-like fold |
Pfam | PF01833 | 8.0E-8 | 434 | 515 | IPR002909 | IPT domain |
SuperFamily | SSF81296 | 4.62E-19 | 434 | 518 | IPR014756 | Immunoglobulin E-set |
CDD | cd00102 | 7.65E-4 | 434 | 518 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 5.0E-17 | 626 | 723 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 16.865 | 628 | 720 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 1.2E-17 | 628 | 722 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 2.23E-15 | 633 | 720 | No hit | No description |
Pfam | PF12796 | 6.5E-9 | 636 | 721 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 7.5E-4 | 661 | 690 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 11.461 | 661 | 693 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 1800 | 700 | 729 | IPR002110 | Ankyrin repeat |
SMART | SM00015 | 13 | 778 | 800 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.199 | 779 | 808 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF52540 | 2.55E-7 | 823 | 885 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 3.5 | 833 | 855 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.078 | 834 | 863 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0089 | 836 | 854 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 1.8E-4 | 856 | 878 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.993 | 857 | 881 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 3.0E-5 | 859 | 878 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 995 aa Download sequence Send to blast |
MMQSGYNIND LLQEAQTRWL KPAEVLYILQ NHEKFKLASE PPQQPSSGSL FLFNKRVLRF 60 FRRDGHHWRK KKDGRTVGEA HERLKVGNAE TLNCYYAHGE NNPNFQRRSY WMLDPAYEHI 120 VLVHYREISE GKSSTGSFAQ SPVSSSSFSH SPSSKTTQNR GSVSMISDLR EPYQNLSSPG 180 SVEVNSDAAI KKNGRENPDK LYGTGESDSS AKFDVGQALR RLEEQLSLNE DSFNEFVDDN 240 PNSDIMDRFN EFLDDTNGSD ILEDHSDMTN QDQFTAFHGP EYVVHDQFYG GRVQMQNNTN 300 NSGEHSQFIG QEFADRNKDS APWKEVLDSC KPSSVVEPKE KCLYGLDTNE KLPSSFTSGP 360 TEGQEHCQWL NSDGTNVKNF SLSLPEEVDS FKLSPYSSAM GTHSDYYTSL FEQGQTGTLD 420 SDISLTVAQK QKFTIREISP EWGYATEATK VIIVGSFLCD PSDSAWSCMF GDIEVPAQII 480 QDGVLCCEAP PHLFGKVTIC ITSSNRVSCS EVREFEYRVK GSSGTNNSPP TETTKSAEEL 540 LLLVRFVQML MSDSSMQNRD SVEPETLRRL KADDDSWDSI IEALLLGSGS ASSNIYWLLE 600 ELLKDKLQQW LSSRSHGLDQ TGCSLSKKEQ GIIHMVAGLG FEWALNSILS CGVNINFRDI 660 NGWTALHWAA RFGREKMVAV LIASGASAGA VTDPNSQDPI GKTPASIAAS SGHKGLAGYL 720 SEVSLTSHLS SLTLEESELS KGSAEVEAEI TVNSISNRSL QGNEDQASLK NTLAAVRNAA 780 QAAARIQSAF RAHSFRKRQH KEAGVSVDDY GISSDDIQGL SAMSKLAFRN PRDYNSAAVS 840 IQKKYRGWKG RKDFLALRQK VVKIQAHVRG YQVRKHYKVI CWAVGILDKI VLRWRRKGVG 900 LRGFRHETQS SEESEDEDIL KVFRKQKVDG AIDEAVSRVL SMVESPEARQ QYHRMLERYH 960 QAKAELGGTS GEADVPNSLD DTFNIEDIDM YQFP* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:12218065}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.1G224000.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020409564.1 | 0.0 | calmodulin-binding transcription activator 4 isoform X1 | ||||
Refseq | XP_020409565.1 | 0.0 | calmodulin-binding transcription activator 4 isoform X1 | ||||
Swissprot | Q9FYG2 | 0.0 | CMTA4_ARATH; Calmodulin-binding transcription activator 4 | ||||
TrEMBL | A0A251R1J9 | 0.0 | A0A251R1J9_PRUPE; Uncharacterized protein | ||||
STRING | EMJ26619 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4548 | 29 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67310.1 | 0.0 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Link Out ? help Back to Top | |
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Phytozome | Prupe.1G224000.1.p |
Entrez Gene | 18791273 |
Publications ? help Back to Top | |||
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