PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G223500.4.p
Common NamePRUPE_ppa023657mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family SBP
Protein Properties Length: 317aa    MW: 34540.8 Da    PI: 9.0745
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G223500.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.92.1e-4141117278
                         -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         C v+gC++dlse+++yhrrhkvCe hsk+++v+++g+eqrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+q 
  Prupe.1G223500.4.p  41 CLVDGCSSDLSECRDYHRRHKVCELHSKTSKVTIKGQEQRFCQQCSRFHSLEEFDEGKRSCRRRLAGHNKRRRKPQL 117
                         **************************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.9E-3334102IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.27438115IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.89E-3939120IPR004333Transcription factor, SBP-box
PfamPF031101.1E-3041114IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MENGSRGKLK DPGVSMMKSS SSAASLKRPR RTNNGAQIAS CLVDGCSSDL SECRDYHRRH  60
KVCELHSKTS KVTIKGQEQR FCQQCSRFHS LEEFDEGKRS CRRRLAGHNK RRRKPQLEPM  120
SSNLGRFLSS YQGPRFLQFG SPQVCPTNAV MNSAWGGAMK AENDDVILHS HSQLSETRRN  180
LFPGSLSCEQ SIESMLSQAS ACQQLVGTNF ALGNSGNSHK MFANGLYCDV ESNRALSLLS  240
STPASRGEIG LSHAGQSSSI WPPQPLIPRL RYNVLGMEDD AAISNLVADG SSNANNMHFQ  300
GMFQIISDGS TAGAPH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-31411141184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197114KRSCRRRLAGHNKRRRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G223500.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007224806.20.0squamosa promoter-binding-like protein 13A isoform X1
RefseqXP_020411259.10.0squamosa promoter-binding-like protein 13A isoform X2
TrEMBLA0A251R2N20.0A0A251R2N2_PRUPE; Uncharacterized protein
STRINGEMJ260050.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.18e-51SBP family protein