PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

Nin-like

Protein Properties

Length: 960aa MW: 105508 Da PI: 5.1725

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.1G200100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.8	2.6e-29	599	650	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Prupe.1G200100.1.p 599 AEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 650 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.075	583	670	IPR003035	RWP-RK domain
Pfam	PF02042	2.5E-26	602	650	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.92E-22	854	941	No hit	No description
Gene3D	G3DSA:3.10.20.240	4.6E-24	856	938	No hit	No description
SMART	SM00666	2.5E-22	859	941	IPR000270	PB1 domain
PROSITE profile	PS51745	22.081	859	941	IPR000270	PB1 domain
CDD	cd06407	1.22E-31	860	940	No hit	No description
Pfam	PF00564	1.7E-17	862	940	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 960 aa Download sequence Send to blast
MEYPFSPKEK GSDHWASSRA QVENLGSLDV GTRNSISEDM FNNISELMNF DTYAGWCSPA 60 AMDQISASFG VPSCPSVTYA PLDALNFAEQ NGEALPGTEG GETFNVGGSS FSCEDKIVFQ 120 QMDTPQFGVS TDSHDANDLA AKLNNGSFQQ NNVMDVGKYM ISRPPGLSLN EKMLKALSLF 180 KESSGGGILA QLWVPVKYGD HYLLSTCEQP YLLDHILAGY REVSRTFTFP AEEKQGSILG 240 LPGRVFVSKV PEWTSDVSYY NKAEYLRVDH AVNHQVRGSI ALPVFNFDSE MSCCAVLELV 300 STKEKPNFDT EMEIVCNALQ AVNLRTTVPP RLLPQCLSMN QRAALTEITD VLRAVCHAHI 360 LPLALTWIPC CYSEGDDDEI RRVRVRGGIT NSNEKSILCI EETACYVNDR TMQGFVHACV 420 EHHLEEGEGI AGKALQSNHP FFLHDVKVYD IYEYPLVHHA RKYGLNAAVA IRLRSTYTGD 480 DDYILEFFLP VNVKGSSEQQ LLLNNLSGTM QKMCKSLRTV SDAELAGVQG SNTGVQKGPI 540 PNSPQQRNSQ TTSSDSELNS IENMPSDVFN RRNGGIKAEN PREQAPGSRR QMEKKRSTAE 600 KNVSLSVLQQ YFSGSLKDAA KSIGVCPTTL KRICRQHGIS RWPSRKINKV NRSLKKIQTV 660 LDSVQGVEGG LKYDPSTGGF VATGSIIQEF DAQKSRLFPE KSLPVQNSEL VTQDPVPVPS 720 VSCNTGESLA IKLEEGGCCI PTSHEEGVKK QNILLMPQRD SKPIAIEGNK WGHSKNSLKL 780 ENSDCHFVSQ SSSSLAAADD MDTGVDGDDG IVEYNQHTSS SMTDSTNCSG STLRSSSSQS 840 FEEQKQPNMN ASSIENGSKI IVKATYKEDT IRFKFDPSVG CFQLYEEVAK RLKLQNGTFQ 900 LKYLDDEEEW VMLVSDADLR ECLEILDDIG TRSVKFMVRD TPFGVGSSGS SNCFLAGGL*

Sequence ? help Back to Top

Protein Sequence Length: 960 aa Download sequence Send to blast

MEYPFSPKEK GSDHWASSRA QVENLGSLDV GTRNSISEDM FNNISELMNF DTYAGWCSPA  60
AMDQISASFG VPSCPSVTYA PLDALNFAEQ NGEALPGTEG GETFNVGGSS FSCEDKIVFQ  120
QMDTPQFGVS TDSHDANDLA AKLNNGSFQQ NNVMDVGKYM ISRPPGLSLN EKMLKALSLF  180
KESSGGGILA QLWVPVKYGD HYLLSTCEQP YLLDHILAGY REVSRTFTFP AEEKQGSILG  240
LPGRVFVSKV PEWTSDVSYY NKAEYLRVDH AVNHQVRGSI ALPVFNFDSE MSCCAVLELV  300
STKEKPNFDT EMEIVCNALQ AVNLRTTVPP RLLPQCLSMN QRAALTEITD VLRAVCHAHI  360
LPLALTWIPC CYSEGDDDEI RRVRVRGGIT NSNEKSILCI EETACYVNDR TMQGFVHACV  420
EHHLEEGEGI AGKALQSNHP FFLHDVKVYD IYEYPLVHHA RKYGLNAAVA IRLRSTYTGD  480
DDYILEFFLP VNVKGSSEQQ LLLNNLSGTM QKMCKSLRTV SDAELAGVQG SNTGVQKGPI  540
PNSPQQRNSQ TTSSDSELNS IENMPSDVFN RRNGGIKAEN PREQAPGSRR QMEKKRSTAE  600
KNVSLSVLQQ YFSGSLKDAA KSIGVCPTTL KRICRQHGIS RWPSRKINKV NRSLKKIQTV  660
LDSVQGVEGG LKYDPSTGGF VATGSIIQEF DAQKSRLFPE KSLPVQNSEL VTQDPVPVPS  720
VSCNTGESLA IKLEEGGCCI PTSHEEGVKK QNILLMPQRD SKPIAIEGNK WGHSKNSLKL  780
ENSDCHFVSQ SSSSLAAADD MDTGVDGDDG IVEYNQHTSS SMTDSTNCSG STLRSSSSQS  840
FEEQKQPNMN ASSIENGSKI IVKATYKEDT IRFKFDPSVG CFQLYEEVAK RLKLQNGTFQ  900
LKYLDDEEEW VMLVSDADLR ECLEILDDIG TRSVKFMVRD TPFGVGSSGS SNCFLAGGL*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppe.20487	0.0	fruit

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.1G200100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020421598.1	0.0	protein NLP9
Refseq	XP_020421601.1	0.0	protein NLP9
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A251R0A4	0.0	A0A251R0A4_PRUPE; Uncharacterized protein
STRING	XP_008237190.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3464	34	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Prupe.1G200100.1.p
Entrez Gene	18792856

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]