PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 148aa MW: 16831.3 Da PI: 9.2614

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.1G196000.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.9	6.1e-27	44	132	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYA++vGF +r+ + ++s+r+g+i r++ C+keg+ + + k r++ra+tr gCka+++vk +k++kw++tk+ ++HnH+l+ Prupe.1G196000.2.p 44 FYDEYARRVGFVMRVMSCRRSERDGRILARRLGCNKEGHCVSIRGKFGPVRKPRASTREGCKAMIHVKYDKSSKWVITKFIKDHNHPLV 132 9************************************99999998**************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-24	44	132	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence Send to blast
MDSDEGARAV ESSSSQALVL YEADSILEPY EGMEFESEDA AKIFYDEYAR RVGFVMRVMS 60 CRRSERDGRI LARRLGCNKE GHCVSIRGKF GPVRKPRAST REGCKAMIHV KYDKSSKWVI 120 TKFIKDHNHP LVVSPREARQ TMCRLQP*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.1G196000.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008222477.1	1e-103	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_016648093.1	1e-103	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_020409810.1	1e-103	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_020409811.1	1e-103	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_021833156.1	1e-103	protein FAR1-RELATED SEQUENCE 5-like
Swissprot	Q9SZL8	2e-26	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A251QZZ7	1e-105	A0A251QZZ7_PRUPE; Uncharacterized protein
STRING	XP_008222477.1	1e-102	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	8e-75	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Prupe.1G196000.2.p
Entrez Gene	18793542

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]