PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 375aa MW: 39699 Da PI: 7.6132

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.1G181300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30	9e-10	295	353	6	55
HHHHHHHHHHHHHHHHHHHCTSCC.C...........TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.as........kapskKlsKaeiLekAveYIksLq 55 +++Er RR ri ++ +L++l+P+ + + k s a++L +Av++Ik Lq Prupe.1G181300.1.p 295 SIAERERRTRISGKLKKLQDLVPNmDKvitdgsykYGLVKQTSYADMLDLAVQHIKGLQ 353 689*******************988***6666666***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.535	289	352	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.42E-9	293	357	No hit	No description
SuperFamily	SSF47459	2.36E-11	294	365	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-10	294	364	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.5E-12	295	358	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.2E-7	295	353	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010119	Biological Process	regulation of stomatal movement
GO:0005829	Cellular Component	cytosol
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MYPSTSSSSS QNPMGPGPSA TGLTRYGSAP GSLLTSAVDS VIGAVADREF SALRSQPHLG 60 HYFSGDGHGD DSSLTSSEST FKVNSSNGGT DATKPLIRSY GLNEMANAIG SPTSSSSCSS 120 PSALVRQRSS PAGFLSHLTA PDNNGGFSVT RGAGIYSSQG GTNGGHGHGV TRLKSQLSFT 180 GQDSLSQISE VSENAMEGVS SNNGHHRAMH SYPTTSFGME SWDNTNSIVF SAPPSKRAKN 240 MDGDLFNCLN ALESQFSLPQ TSLEMATVEK LLHIPEDSVP CKIRAKRGCA THPRSIAERE 300 RRTRISGKLK KLQDLVPNMD KVITDGSYKY GLVKQTSYAD MLDLAVQHIK GLQNQVEDLH 360 KDLDNCTCGC KPNT*

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MYPSTSSSSS QNPMGPGPSA TGLTRYGSAP GSLLTSAVDS VIGAVADREF SALRSQPHLG  60
HYFSGDGHGD DSSLTSSEST FKVNSSNGGT DATKPLIRSY GLNEMANAIG SPTSSSSCSS  120
PSALVRQRSS PAGFLSHLTA PDNNGGFSVT RGAGIYSSQG GTNGGHGHGV TRLKSQLSFT  180
GQDSLSQISE VSENAMEGVS SNNGHHRAMH SYPTTSFGME SWDNTNSIVF SAPPSKRAKN  240
MDGDLFNCLN ALESQFSLPQ TSLEMATVEK LLHIPEDSVP CKIRAKRGCA THPRSIAERE  300
RRTRISGKLK KLQDLVPNMD KVITDGSYKY GLVKQTSYAD MLDLAVQHIK GLQNQVEDLH  360
KDLDNCTCGC KPNT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.1G181300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007226948.2	0.0	transcription factor bHLH128
Swissprot	Q8H102	5e-96	BH128_ARATH; Transcription factor bHLH128
TrEMBL	A0A251QZ89	0.0	A0A251QZ89_PRUPE; Uncharacterized protein
STRING	XP_008222661.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7680	31	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05805.1	3e-89	bHLH family protein

Link Out ? help Back to Top
Phytozome	Prupe.1G181300.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]