PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G173300.1.p
Common NamePRUPE_ppa003543mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 568aa    MW: 60724.6 Da    PI: 7.5012
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G173300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.89.5e-09378425455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Prupe.1G173300.1.p 378 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 425
                         8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.45E-17372443IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.75E-11372429No hitNo description
Gene3DG3DSA:4.10.280.104.3E-17374442IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663374424IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.7E-6378425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-10380430IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MGKDRTATPS WNPSSFGMEM QSNELNCGSQ QLPNSLFNAN WDNSMDQSDP FESALSSIVS  60
SPAASNAAIA AGKGGGDGEM IRELIGRLGS ICNSGEISSH SYMCGNNSTN TSCYSTPLNS  120
SPKLNLSMID PQMRGNLPIP GNHLPSHPSL APFQADPGFV ERAARFSCFG GGNFGGLNGQ  180
VNLNEAELAY RSMPKIDSGK LSRASSNQSL KVAAGSQLGV QESNKSSPQG GNSAPDKKFG  240
RFSRSSTPEN AELGDSREGS SVSEQIPGGD MSVKAENVTN SRKRKPVARG KAKETSSSPS  300
VKDGKVVAEK EEPNSKRSKT DEASGNEKAA AKAKIEPSGG SKATGDGAQK QTKDNSEPPE  360
APKDYIHVRA RRGQATDSHS LAERVRREKI SERMKFLQDL VPGCNKVTGK AVMLDEIINY  420
VQSLQRQVEF LSMKLSTVNP RMDLNMEALL SKEILQSRGS LQNALYQLDS AIPSFPFGYQ  480
PQQLPPLHSS SISSGTETQF PESPLNAAMR QSQGMQLPTF DRFGGAAPQA PQFFEDDLQS  540
VVQMGFGQIQ QESLHGSMAS AQMKVEL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.131790.0fruit
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G173300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894010.0KP689401.1 Prunus pseudocerasus isolate Unigene19909 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007221818.10.0transcription factor bHLH62
TrEMBLM5XAA50.0M5XAA5_PRUPE; Uncharacterized protein
STRINGEMJ230170.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25303480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48560.12e-72bHLH family protein