PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

MYB_related

Protein Properties

Length: 1167aa MW: 130308 Da PI: 9.2934

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.1G139300.6.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.2	2.2e-09	46	81	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 WT+eE e +++a +++G++ Wk++a+ + +R+ +++ Prupe.1G139300.6.p 46 QWTKEELENFYEAYRKYGKD-WKKVASVVR-HRSVEMV 81 6***************99.******9.9998766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	10.945	42	93	IPR017884	SANT domain
SuperFamily	SSF46689	6.8E-11	43	91	IPR009057	Homeodomain-like
SMART	SM00717	1.9E-6	43	91	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.0E-5	46	80	IPR009057	Homeodomain-like
Pfam	PF00249	5.4E-8	46	81	IPR001005	SANT/Myb domain
CDD	cd00167	2.66E-7	47	81	No hit	No description
SMART	SM01135	1.1E-56	628	729	IPR033471	DIRP domain
Pfam	PF06584	2.6E-32	628	728	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1167 aa Download sequence Send to blast
MAPSRKSRSV NKRFSYMNEA ASNKYGDNAN KTGQKKRKLS DMLGPQWTKE ELENFYEAYR 60 KYGKDWKKVA SVVRHRSVEM VEALYSMNKA YLSLPEGVAS VVGLIAMMTD HYCVLGGSDS 120 EQENNEDAET SRKPQKHARS KLRSESSKGL EGHIPDFSES HPMASTSDCL SLLKNRRSGI 180 RPHAVKKRTP RVPVAYSNDQ DNSRKYSSPA RQGLKLNADA NNNDVAHEIA LALTEASHRG 240 GSPLVSWTPK RKAKGTTPSP VRNGERMCVE SEVTNARLHG CEMDEGGCEL SLGSTEADND 300 YYDRNEKYAM GREGTGTLEV QQRRKRYFVK KKEVDESKNK HVEDIKEACS GTEEGQKLGA 360 IKGKLDTKVA KSARSFYKDT RKKSKKALIG GDEGSPFDAL QTLADLSLMM PEAADTESSA 420 HVKEDNFNIA NKSKLKGSRP IPGVEHAVFK TSKLGKLGEG VHQSNSGLQK RKQKSLSFKI 480 YNEAQTDCYA SDNEKIEATV EVKKSASKGK RSSHYTTHPK QGKLVKKTLW NASTTIDRKR 540 EENNSGLSTV QVPSANPANL PTKNKGKWEM DMQKSSIQKD TKSPESILDD QPDKLGPSFR 600 NRELNIKEKL SNCLSRYQVR RWCAFEWFYS AIDYPWFAKR EFVEYLDHVG LGHVPRLTRV 660 EWGVIRSSLG RPRRFSEQFL KEEKEKLNQY RESVRTHYAE LNAGTREGLP TDLARPLSVG 720 QHVIAFHPRA REIHNGIVLT VDHSRCSVQF DQPELGVEYI MDVDCMPLHP AENLPASFRK 780 HNVTVNRYIE NLKELKINEQ LKEGTTKGYM KISSSDKLVS TGVPGYILPS NHRINKSSKQ 840 TGVKSSSFNV QAKVGPGETA STRVANYQPS IPAQTQAKEA DVQAIYELTR ALDKKEAVVS 900 ELRRMNDEVF ENQRDEDNSI RDSEPFKKEY AAVLLQLSQV NDQVSSALLC LRQRNTYRGS 960 SPHTVVKTMD NLSGPGSLSN SYGYSCDVQE SASHMREIVE SSRAKAHKMV DAAMQAFSSL 1020 RKENNFDKIE EVIDFVSNRL SDDAGMLAMG SSTTLADPIP FSQDQLTSCT SKPLATGCAH 1080 DPPKSNNLSN QSEEKLLSDL IVNCVAAFMM IQTCTARQFP PADVAQVLDH AVTSLQPFCP 1140 QNLSVYGEIQ KCMGIIRNQI MALVPT*

Sequence ? help Back to Top

Protein Sequence Length: 1167 aa Download sequence Send to blast

MAPSRKSRSV NKRFSYMNEA ASNKYGDNAN KTGQKKRKLS DMLGPQWTKE ELENFYEAYR  60
KYGKDWKKVA SVVRHRSVEM VEALYSMNKA YLSLPEGVAS VVGLIAMMTD HYCVLGGSDS  120
EQENNEDAET SRKPQKHARS KLRSESSKGL EGHIPDFSES HPMASTSDCL SLLKNRRSGI  180
RPHAVKKRTP RVPVAYSNDQ DNSRKYSSPA RQGLKLNADA NNNDVAHEIA LALTEASHRG  240
GSPLVSWTPK RKAKGTTPSP VRNGERMCVE SEVTNARLHG CEMDEGGCEL SLGSTEADND  300
YYDRNEKYAM GREGTGTLEV QQRRKRYFVK KKEVDESKNK HVEDIKEACS GTEEGQKLGA  360
IKGKLDTKVA KSARSFYKDT RKKSKKALIG GDEGSPFDAL QTLADLSLMM PEAADTESSA  420
HVKEDNFNIA NKSKLKGSRP IPGVEHAVFK TSKLGKLGEG VHQSNSGLQK RKQKSLSFKI  480
YNEAQTDCYA SDNEKIEATV EVKKSASKGK RSSHYTTHPK QGKLVKKTLW NASTTIDRKR  540
EENNSGLSTV QVPSANPANL PTKNKGKWEM DMQKSSIQKD TKSPESILDD QPDKLGPSFR  600
NRELNIKEKL SNCLSRYQVR RWCAFEWFYS AIDYPWFAKR EFVEYLDHVG LGHVPRLTRV  660
EWGVIRSSLG RPRRFSEQFL KEEKEKLNQY RESVRTHYAE LNAGTREGLP TDLARPLSVG  720
QHVIAFHPRA REIHNGIVLT VDHSRCSVQF DQPELGVEYI MDVDCMPLHP AENLPASFRK  780
HNVTVNRYIE NLKELKINEQ LKEGTTKGYM KISSSDKLVS TGVPGYILPS NHRINKSSKQ  840
TGVKSSSFNV QAKVGPGETA STRVANYQPS IPAQTQAKEA DVQAIYELTR ALDKKEAVVS  900
ELRRMNDEVF ENQRDEDNSI RDSEPFKKEY AAVLLQLSQV NDQVSSALLC LRQRNTYRGS  960
SPHTVVKTMD NLSGPGSLSN SYGYSCDVQE SASHMREIVE SSRAKAHKMV DAAMQAFSSL  1020
RKENNFDKIE EVIDFVSNRL SDDAGMLAMG SSTTLADPIP FSQDQLTSCT SKPLATGCAH  1080
DPPKSNNLSN QSEEKLLSDL IVNCVAAFMM IQTCTARQFP PADVAQVLDH AVTSLQPFCP  1140
QNLSVYGEIQ KCMGIIRNQI MALVPT*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed ubiquitously in vegetative and reproductive tissues. {ECO:0000269\|PubMed:15246533}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.1G139300.6.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020426231.1	0.0	protein ALWAYS EARLY 3 isoform X1
Swissprot	Q6A332	0.0	ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBL	A0A251QXC4	0.0	A0A251QXC4_PRUPE; Uncharacterized protein
STRING	EMJ28562	0.0	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Link Out ? help Back to Top
Phytozome	Prupe.1G139300.6.p
Entrez Gene	18793507

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]