PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G139300.3.p
Common NamePRUPE_ppa000476mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 1106aa    MW: 123505 Da    PI: 8.8214
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G139300.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.32e-094681340
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                         WT+eE e +++a +++G++ Wk++a+ +  +R+ +++
  Prupe.1G139300.3.p 46 QWTKEELENFYEAYRKYGKD-WKKVASVVR-HRSVEMV 81
                        6*****************99.********9.9998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.9454293IPR017884SANT domain
SuperFamilySSF466896.36E-114391IPR009057Homeodomain-like
SMARTSM007171.9E-64391IPR001005SANT/Myb domain
PfamPF002495.1E-84681IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-54680IPR009057Homeodomain-like
CDDcd001672.29E-74781No hitNo description
SMARTSM011351.1E-56591692IPR033471DIRP domain
PfamPF065842.4E-32591691IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1106 aa     Download sequence    Send to blast
MAPSRKSRSV NKRFSYMNEA ASNKYGDNAN KTGQKKRKLS DMLGPQWTKE ELENFYEAYR  60
KYGKDWKKVA SVVRHRSVEM VEALYSMNKA YLSLPEGVAS VVGLIAMMTD HYCVLGGSDS  120
EQENNEDAET SRKPQKHARS KLRSESSKGL EGHIPDFSES HPMASTSDCL SLLKNRRSGI  180
RPHAVKKRTP RVPVAYSNDQ DNSRKYSSPA RQGLKLNADA NNNDVAHEIA LALTEASHRG  240
GSPLVSWTPK RKAKGTTPSP VRNGERMCVE SEVTNARLHG CEMDEGGCEL SLGSTEADND  300
YYDRNEKYAM GREGTGTLEV QQRRKRYFVK KKEVDESKNK HVEDIKEACS GTEEGQKLGA  360
IKGKLDTKVA KSARSFYKDT RKKSKKALIG GDEGSPFDAL QTLADLSLMM PEAADTESSA  420
HVKEDNFNIA NKSKLKGSRP IPGVEHAVFK TSKLGKLGEG VHQSNSGLQK RKQKSLSFKI  480
YNEAQTDCYA SDNEKIEATV EVKKSASKGL STVQVPSANP ANLPTKNKGK WEMDMQKSSI  540
QKDTKSPESI LDDQPDKLGP SFRNRELNIK EKLSNCLSRY QVRRWCAFEW FYSAIDYPWF  600
AKREFVEYLD HVGLGHVPRL TRVEWGVIRS SLGRPRRFSE QFLKEEKEKL NQYRESVRTH  660
YAELNAGTRE GLPTDLARPL SVGQHVIAFH PRAREIHNGI VLTVDHSRCS VQFDQPELGV  720
EYIMDVDCMP LHPAENLPAS FRKHNVTVNR YIENLKELKI NEQLKEGTTK GYMKISSSDK  780
LVKSSSFNVQ AKVGPGETAS TRVANYQPSI PAQTQAKEAD VQAIYELTRA LDKKEAVVSE  840
LRRMNDEVFE NQRDEDNSIR DSEPFKKEYA AVLLQLSQVN DQVSSALLCL RQRNTYRGSS  900
PHTVVKTMDN LSGPGSLSNS YGYSCDVQES ASHMREIVES SRAKAHKMVD AAMQAFSSLR  960
KENNFDKIEE VIDFVSNRLS DDAGMLAMGS STTLADPIPF SQDQLTSCTS KPLATGCAHD  1020
PPKSNNLSNQ SEEKLLSDLI VNCVAAFMMI QTCTARQFPP ADVAQVLDHA VTSLQPFCPQ  1080
NLSVYGEIQK CMGIIRNQIM ALVPT*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed ubiquitously in vegetative and reproductive tissues. {ECO:0000269|PubMed:15246533}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G139300.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020426238.10.0protein ALWAYS EARLY 3 isoform X2
SwissprotQ6A3320.0ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBLA0A251QWZ50.0A0A251QWZ5_PRUPE; Uncharacterized protein
STRINGEMJ285620.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding
Publications ? help Back to Top
  1. Pfaff C, et al.
    ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development.
    Plant Physiol., 2018. 177(1): p. 226-240
    [PMID:29540591]