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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.1G130300.1.p | ||||||||
Common Name | PRUPE_ppa008563mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | ERF | ||||||||
Protein Properties | Length: 290aa MW: 31563.9 Da PI: 7.9747 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.5 | 4.4e-20 | 112 | 161 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp + r++lg++ taeeAa+a++ a+++++g Prupe.1G130300.1.p 112 VYRGIRQRP-WGKWAAEIRDPQ----KgVRVWLGTYNTAEEAARAYDDAARRIRG 161 69*******.**********94....35*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.57E-22 | 112 | 169 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.6E-13 | 112 | 161 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.7E-40 | 112 | 175 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.276 | 112 | 169 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.1E-33 | 112 | 170 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-11 | 113 | 124 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.48E-23 | 113 | 171 | No hit | No description |
PRINTS | PR00367 | 1.6E-11 | 135 | 151 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008219 | Biological Process | cell death | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051707 | Biological Process | response to other organism | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MCGGAIISDF ISAKRGRTLT AEDLWSEFDT ISDLLGLDHS SSSNNNNKKD QFEHQQNNKS 60 IAQKPKIPLS KGAGTSEKPK KTSPGAGAGA GAQKEEEVGK ASDKNKRVRK NVYRGIRQRP 120 WGKWAAEIRD PQKGVRVWLG TYNTAEEAAR AYDDAARRIR GGKAKLNFPE LPPSSVPAPA 180 TPPLKKRCVV GPAESTQSSL GSSGNYCNCD PFEGGEIYGK KEVGGEYELK EQISSLESFL 240 GLDEEEPSEV NGRGGGESNN SLDLWMLGDL VTHHHHQQQQ QQQQGQQLY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-22 | 113 | 169 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppe.30 | 0.0 | fruit |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00109 | PBM | Transfer from AT3G16770 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.1G130300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ825098 | 0.0 | HQ825098.1 Prunus persica cultivar Venture ethylene responsive factor (ERF2.c) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007222650.1 | 0.0 | ethylene-responsive transcription factor RAP2-3 | ||||
TrEMBL | A0A251QWR8 | 0.0 | A0A251QWR8_PRUPE; Uncharacterized protein | ||||
TrEMBL | M5XD33 | 0.0 | M5XD33_PRUPE; Uncharacterized protein | ||||
STRING | EMJ23849 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4892 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 2e-47 | ethylene-responsive element binding protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.1G130300.1.p |
Entrez Gene | 18789727 |