PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 731aa MW: 83688.4 Da PI: 6.7975

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.1G125700.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.6	1.3e-20	53	146	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnH 87 +fY+++Ak++GFs+r+++++ + + +t+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k+ +w+vt +++ HnH Prupe.1G125700.2.p 53 EFYCSFAKQCGFSIRRHRTRGKdGVGRGVTRRDFTCHRGGYPQMKPSEDGKMQRNRKSSRCGCQAYMRIVKRAdfdVPEWRVTGFSNIHNH 143 6*************9998874556679***************9***************98887676789********** PP FAR1 88 ela 90 el Prupe.1G125700.2.p 144 ELL 146 *96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-17	53	146	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.3E-22	269	361	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.829	533	581	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.7E-6	555	579	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.9E-5	556	583	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 731 aa Download sequence Send to blast
MSEGTSLGME DLSQDDIGTI EETAEDTILS RQTSVNLVPF VGQRFVSQEA AYEFYCSFAK 60 QCGFSIRRHR TRGKDGVGRG VTRRDFTCHR GGYPQMKPSE DGKMQRNRKS SRCGCQAYMR 120 IVKRADFDVP EWRVTGFSNI HNHELLKSNE VRLLPAYCSI STDDKSRICM FAKAGMSVRQ 180 MLRLMELEKG VKLGCLPFTE IDVRNLLQSF RNVDRDNDAI DLIAMCKKMK DENPNFKYEF 240 KIDGHNRLEH IAWSYASSVQ LYEAFGDTTV FDTTHRLDAY DMLLGIWLGV DNHGMTCFFG 300 CVLLRDENIQ SFSWALKTFL GFMKGKAPQT MLTDHNMWLK EAIAVDVPQS KHAFCIWHIV 360 AKFSDWFSVL LGSRYDDWKA EFHRLFNLDF VEDFEERWRE MVNEFGLHTN KHVISLYALR 420 NFWALAYLRH YFFAEMMSTS QAESINAFIQ RFLSAQSQLD RFVEQVADIV DYNDRVGAKQ 480 KMQRKMQRVC LKTGSPIESH AASVLTPYAF GKLQEELVLA PQYASLLVDE GCFQVRHHTE 540 EDGGCKVVWI PCQGHISCSC YQFEFSGILC RHVLRVLSTN NCFHIPDQYL PTRWCGVSSS 600 STNTFETATI MKDNSEKIHL LESLASTLVT ESVETEDRLD AACEQIGMAL SRIKDLPRTT 660 HNAIDIVYNC PSESLILQDV EEADGIIRFT VGNSHESVTL GKLKERRPRD IVEISRKRRH 720 CSGPCCLSVQ *

Sequence ? help Back to Top

Protein Sequence Length: 731 aa Download sequence Send to blast

MSEGTSLGME DLSQDDIGTI EETAEDTILS RQTSVNLVPF VGQRFVSQEA AYEFYCSFAK  60
QCGFSIRRHR TRGKDGVGRG VTRRDFTCHR GGYPQMKPSE DGKMQRNRKS SRCGCQAYMR  120
IVKRADFDVP EWRVTGFSNI HNHELLKSNE VRLLPAYCSI STDDKSRICM FAKAGMSVRQ  180
MLRLMELEKG VKLGCLPFTE IDVRNLLQSF RNVDRDNDAI DLIAMCKKMK DENPNFKYEF  240
KIDGHNRLEH IAWSYASSVQ LYEAFGDTTV FDTTHRLDAY DMLLGIWLGV DNHGMTCFFG  300
CVLLRDENIQ SFSWALKTFL GFMKGKAPQT MLTDHNMWLK EAIAVDVPQS KHAFCIWHIV  360
AKFSDWFSVL LGSRYDDWKA EFHRLFNLDF VEDFEERWRE MVNEFGLHTN KHVISLYALR  420
NFWALAYLRH YFFAEMMSTS QAESINAFIQ RFLSAQSQLD RFVEQVADIV DYNDRVGAKQ  480
KMQRKMQRVC LKTGSPIESH AASVLTPYAF GKLQEELVLA PQYASLLVDE GCFQVRHHTE  540
EDGGCKVVWI PCQGHISCSC YQFEFSGILC RHVLRVLSTN NCFHIPDQYL PTRWCGVSSS  600
STNTFETATI MKDNSEKIHL LESLASTLVT ESVETEDRLD AACEQIGMAL SRIKDLPRTT  660
HNAIDIVYNC PSESLILQDV EEADGIIRFT VGNSHESVTL GKLKERRPRD IVEISRKRRH  720
CSGPCCLSVQ *

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.1G125700.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020410484.1	0.0	protein FAR1-RELATED SEQUENCE 11 isoform X1
Refseq	XP_020410485.1	0.0	protein FAR1-RELATED SEQUENCE 11 isoform X1
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A251QZE3	0.0	A0A251QZE3_PRUPE; Uncharacterized protein
STRING	EMJ26407	0.0	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Link Out ? help Back to Top
Phytozome	Prupe.1G125700.2.p
Entrez Gene	18790443

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]