PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 751aa MW: 86033.2 Da PI: 7.1171

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.1G125700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.6	1.4e-20	73	166	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnH 87 +fY+++Ak++GFs+r+++++ + + +t+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k+ +w+vt +++ HnH Prupe.1G125700.1.p 73 EFYCSFAKQCGFSIRRHRTRGKdGVGRGVTRRDFTCHRGGYPQMKPSEDGKMQRNRKSSRCGCQAYMRIVKRAdfdVPEWRVTGFSNIHNH 163 6*************9998874556679***************9***************98887676789********** PP FAR1 88 ela 90 el Prupe.1G125700.1.p 164 ELL 166 *96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-17	73	166	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.4E-22	289	381	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.829	553	601	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.8E-6	575	599	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.9E-5	576	603	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 751 aa Download sequence Send to blast
MRFLRELLKK SKCVGDHSSK MSEGTSLGME DLSQDDIGTI EETAEDTILS RQTSVNLVPF 60 VGQRFVSQEA AYEFYCSFAK QCGFSIRRHR TRGKDGVGRG VTRRDFTCHR GGYPQMKPSE 120 DGKMQRNRKS SRCGCQAYMR IVKRADFDVP EWRVTGFSNI HNHELLKSNE VRLLPAYCSI 180 STDDKSRICM FAKAGMSVRQ MLRLMELEKG VKLGCLPFTE IDVRNLLQSF RNVDRDNDAI 240 DLIAMCKKMK DENPNFKYEF KIDGHNRLEH IAWSYASSVQ LYEAFGDTTV FDTTHRLDAY 300 DMLLGIWLGV DNHGMTCFFG CVLLRDENIQ SFSWALKTFL GFMKGKAPQT MLTDHNMWLK 360 EAIAVDVPQS KHAFCIWHIV AKFSDWFSVL LGSRYDDWKA EFHRLFNLDF VEDFEERWRE 420 MVNEFGLHTN KHVISLYALR NFWALAYLRH YFFAEMMSTS QAESINAFIQ RFLSAQSQLD 480 RFVEQVADIV DYNDRVGAKQ KMQRKMQRVC LKTGSPIESH AASVLTPYAF GKLQEELVLA 540 PQYASLLVDE GCFQVRHHTE EDGGCKVVWI PCQGHISCSC YQFEFSGILC RHVLRVLSTN 600 NCFHIPDQYL PTRWCGVSSS STNTFETATI MKDNSEKIHL LESLASTLVT ESVETEDRLD 660 AACEQIGMAL SRIKDLPRTT HNAIDIVYNC PSESLILQDV EEADGIIRFT VGNSHESVTL 720 GKLKERRPRD IVEISRKRRH CSGPCCLSVQ *

Sequence ? help Back to Top

Protein Sequence Length: 751 aa Download sequence Send to blast

MRFLRELLKK SKCVGDHSSK MSEGTSLGME DLSQDDIGTI EETAEDTILS RQTSVNLVPF  60
VGQRFVSQEA AYEFYCSFAK QCGFSIRRHR TRGKDGVGRG VTRRDFTCHR GGYPQMKPSE  120
DGKMQRNRKS SRCGCQAYMR IVKRADFDVP EWRVTGFSNI HNHELLKSNE VRLLPAYCSI  180
STDDKSRICM FAKAGMSVRQ MLRLMELEKG VKLGCLPFTE IDVRNLLQSF RNVDRDNDAI  240
DLIAMCKKMK DENPNFKYEF KIDGHNRLEH IAWSYASSVQ LYEAFGDTTV FDTTHRLDAY  300
DMLLGIWLGV DNHGMTCFFG CVLLRDENIQ SFSWALKTFL GFMKGKAPQT MLTDHNMWLK  360
EAIAVDVPQS KHAFCIWHIV AKFSDWFSVL LGSRYDDWKA EFHRLFNLDF VEDFEERWRE  420
MVNEFGLHTN KHVISLYALR NFWALAYLRH YFFAEMMSTS QAESINAFIQ RFLSAQSQLD  480
RFVEQVADIV DYNDRVGAKQ KMQRKMQRVC LKTGSPIESH AASVLTPYAF GKLQEELVLA  540
PQYASLLVDE GCFQVRHHTE EDGGCKVVWI PCQGHISCSC YQFEFSGILC RHVLRVLSTN  600
NCFHIPDQYL PTRWCGVSSS STNTFETATI MKDNSEKIHL LESLASTLVT ESVETEDRLD  660
AACEQIGMAL SRIKDLPRTT HNAIDIVYNC PSESLILQDV EEADGIIRFT VGNSHESVTL  720
GKLKERRPRD IVEISRKRRH CSGPCCLSVQ *

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.1G125700.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020410484.1	0.0	protein FAR1-RELATED SEQUENCE 11 isoform X1
Refseq	XP_020410485.1	0.0	protein FAR1-RELATED SEQUENCE 11 isoform X1
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A251QZE3	0.0	A0A251QZE3_PRUPE; Uncharacterized protein
STRING	EMJ26407	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF594	30	113

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Link Out ? help Back to Top
Phytozome	Prupe.1G125700.1.p
Entrez Gene	18790443

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]